Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00033

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00032 and MIT1002_00033 are separated by 280 nucleotidesMIT1002_00033 and MIT1002_00034 are separated by 126 nucleotidesMIT1002_00034 and MIT1002_00035 are separated by 142 nucleotides MIT1002_00032: MIT1002_00032 - 16S ribosomal RNA, at 34,422 to 35,942 _00032 MIT1002_00033: MIT1002_00033 - 23S ribosomal RNA, at 36,223 to 39,099 _00033 MIT1002_00034: MIT1002_00034 - 5S ribosomal RNA, at 39,226 to 39,340 _00034 MIT1002_00035: MIT1002_00035 - 5S ribosomal RNA, at 39,483 to 39,597 _00035 Position (kb) 36 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 35.518 kb on + strand, within MIT1002_00032at 35.518 kb on + strand, within MIT1002_00032at 35.537 kb on + strand, within MIT1002_00032at 36.740 kb on + strand, within MIT1002_00033at 39.122 kb on + strandat 39.376 kb on + strandat 39.588 kb on + strandat 39.656 kb on + strandat 39.656 kb on + strandat 39.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
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35,518 + MIT1002_00032 0.72 -0.0
35,518 + MIT1002_00032 0.72 -1.8
35,537 + MIT1002_00032 0.73 -1.7
36,740 + MIT1002_00033 0.18 -2.7
39,122 + -2.4
39,376 + +1.8
39,588 + -0.5
39,656 + +0.3
39,656 + +0.3
39,664 - +0.3

Or see this region's nucleotide sequence