Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00013 and MIT1002_00014 are separated by 416 nucleotides MIT1002_00014 and MIT1002_00015 are separated by 421 nucleotides
MIT1002_00013: MIT1002_00013 - putative GTP-binding protein EngB, at 13,835 to 14,470
_00013
MIT1002_00014: MIT1002_00014 - DNA polymerase I, at 14,887 to 17,679
_00014
MIT1002_00015: MIT1002_00015 - Sigma cross-reacting protein 27A, at 18,101 to 18,754
_00015
Position (kb) 14
15
16
17
18 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 14.439 kb on + strand at 14.460 kb on + strand at 14.468 kb on - strand at 14.468 kb on - strand at 14.482 kb on - strand at 14.482 kb on - strand at 14.482 kb on - strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.497 kb on + strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.505 kb on - strand at 14.512 kb on + strand at 14.519 kb on + strand at 14.621 kb on - strand at 14.731 kb on + strand at 14.746 kb on - strand at 14.759 kb on + strand at 14.767 kb on + strand at 14.767 kb on - strand at 15.135 kb on - strand at 15.246 kb on - strand, within MIT1002_00014 at 15.247 kb on - strand, within MIT1002_00014 at 15.293 kb on - strand, within MIT1002_00014 at 15.369 kb on - strand, within MIT1002_00014 at 15.428 kb on - strand, within MIT1002_00014 at 15.541 kb on - strand, within MIT1002_00014 at 15.783 kb on - strand, within MIT1002_00014 at 15.848 kb on + strand, within MIT1002_00014 at 15.922 kb on - strand, within MIT1002_00014 at 15.969 kb on - strand, within MIT1002_00014 at 16.010 kb on - strand, within MIT1002_00014 at 16.031 kb on - strand, within MIT1002_00014 at 16.031 kb on - strand, within MIT1002_00014 at 16.083 kb on - strand, within MIT1002_00014 at 16.083 kb on - strand, within MIT1002_00014 at 16.083 kb on - strand, within MIT1002_00014 at 16.317 kb on + strand, within MIT1002_00014 at 16.317 kb on + strand, within MIT1002_00014 at 16.317 kb on + strand, within MIT1002_00014 at 16.320 kb on - strand, within MIT1002_00014 at 16.325 kb on - strand, within MIT1002_00014 at 16.325 kb on - strand, within MIT1002_00014 at 16.325 kb on - strand, within MIT1002_00014 at 16.325 kb on - strand, within MIT1002_00014 at 16.335 kb on - strand, within MIT1002_00014 at 16.335 kb on - strand, within MIT1002_00014 at 16.551 kb on - strand, within MIT1002_00014 at 16.731 kb on + strand, within MIT1002_00014 at 16.739 kb on - strand, within MIT1002_00014 at 17.728 kb on - strand at 17.728 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.733 kb on - strand at 17.755 kb on + strand at 17.756 kb on + strand at 17.764 kb on - strand at 17.990 kb on + strand at 18.003 kb on - strand at 18.007 kb on + strand at 18.129 kb on + strand at 18.129 kb on + strand at 18.152 kb on + strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.160 kb on - strand at 18.219 kb on - strand, within MIT1002_00015 at 18.273 kb on - strand, within MIT1002_00015 at 18.309 kb on + strand, within MIT1002_00015 at 18.314 kb on + strand, within MIT1002_00015 at 18.322 kb on - strand, within MIT1002_00015 at 18.351 kb on - strand, within MIT1002_00015 at 18.403 kb on - strand, within MIT1002_00015 at 18.451 kb on + strand, within MIT1002_00015 at 18.471 kb on - strand, within MIT1002_00015 at 18.595 kb on - strand, within MIT1002_00015 at 18.606 kb on - strand, within MIT1002_00015 at 18.609 kb on + strand, within MIT1002_00015 at 18.611 kb on + strand, within MIT1002_00015 at 18.611 kb on + strand, within MIT1002_00015 at 18.616 kb on + strand, within MIT1002_00015 at 18.619 kb on - strand, within MIT1002_00015 at 18.619 kb on - strand, within MIT1002_00015 at 18.626 kb on + strand, within MIT1002_00015 at 18.666 kb on - strand, within MIT1002_00015
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6 remove 14,439 + +0.3 14,460 + +0.0 14,468 - -0.4 14,468 - +1.0 14,482 - +2.8 14,482 - -1.0 14,482 - +0.8 14,497 + -3.0 14,497 + -0.0 14,497 + -2.0 14,497 + -2.8 14,497 + +0.1 14,497 + -0.7 14,497 + -1.6 14,505 - -2.2 14,505 - -0.8 14,505 - +1.5 14,505 - -0.4 14,505 - -2.2 14,512 + -0.4 14,519 + -1.4 14,621 - +0.8 14,731 + +0.2 14,746 - +0.3 14,759 + -0.0 14,767 + +0.5 14,767 - +1.3 15,135 - +0.8 15,246 - MIT1002_00014 0.13 +2.1 15,247 - MIT1002_00014 0.13 +0.1 15,293 - MIT1002_00014 0.15 -0.5 15,369 - MIT1002_00014 0.17 +1.7 15,428 - MIT1002_00014 0.19 -1.0 15,541 - MIT1002_00014 0.23 -0.3 15,783 - MIT1002_00014 0.32 -0.5 15,848 + MIT1002_00014 0.34 +0.3 15,922 - MIT1002_00014 0.37 -0.3 15,969 - MIT1002_00014 0.39 -0.3 16,010 - MIT1002_00014 0.40 -1.4 16,031 - MIT1002_00014 0.41 +0.4 16,031 - MIT1002_00014 0.41 +1.1 16,083 - MIT1002_00014 0.43 -1.4 16,083 - MIT1002_00014 0.43 -2.1 16,083 - MIT1002_00014 0.43 -0.7 16,317 + MIT1002_00014 0.51 +1.1 16,317 + MIT1002_00014 0.51 -0.5 16,317 + MIT1002_00014 0.51 +0.1 16,320 - MIT1002_00014 0.51 +0.1 16,325 - MIT1002_00014 0.51 +0.3 16,325 - MIT1002_00014 0.51 -1.5 16,325 - MIT1002_00014 0.51 -0.6 16,325 - MIT1002_00014 0.51 -0.2 16,335 - MIT1002_00014 0.52 +0.3 16,335 - MIT1002_00014 0.52 -0.6 16,551 - MIT1002_00014 0.60 -1.8 16,731 + MIT1002_00014 0.66 -1.1 16,739 - MIT1002_00014 0.66 -1.4 17,728 - -0.3 17,728 - +1.6 17,733 - -0.8 17,733 - -2.0 17,733 - +0.3 17,733 - -2.5 17,733 - +1.5 17,755 + -0.9 17,756 + -1.5 17,764 - -2.7 17,990 + -2.0 18,003 - -2.1 18,007 + -1.0 18,129 + +0.3 18,129 + +0.3 18,152 + +1.1 18,160 - +1.1 18,160 - -2.0 18,160 - -0.5 18,160 - +0.5 18,219 - MIT1002_00015 0.18 +0.3 18,273 - MIT1002_00015 0.26 +0.8 18,309 + MIT1002_00015 0.32 +0.2 18,314 + MIT1002_00015 0.33 +2.6 18,322 - MIT1002_00015 0.34 -1.0 18,351 - MIT1002_00015 0.38 -0.9 18,403 - MIT1002_00015 0.46 -0.6 18,451 + MIT1002_00015 0.54 -0.4 18,471 - MIT1002_00015 0.57 +1.8 18,595 - MIT1002_00015 0.76 +0.5 18,606 - MIT1002_00015 0.77 +1.4 18,609 + MIT1002_00015 0.78 +2.0 18,611 + MIT1002_00015 0.78 -0.5 18,611 + MIT1002_00015 0.78 +0.4 18,616 + MIT1002_00015 0.79 +1.6 18,619 - MIT1002_00015 0.79 -0.9 18,619 - MIT1002_00015 0.79 -1.4 18,626 + MIT1002_00015 0.80 -1.0 18,666 - MIT1002_00015 0.86 +0.7
Or see this region's nucleotide sequence