Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00003

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00002 and MIT1002_00003 are separated by 125 nucleotidesMIT1002_00003 and MIT1002_00004 are separated by 8 nucleotides MIT1002_00002: MIT1002_00002 - DNA polymerase III subunit beta, at 1,626 to 2,726 _00002 MIT1002_00003: MIT1002_00003 - DNA replication and repair protein RecF, at 2,852 to 3,940 _00003 MIT1002_00004: MIT1002_00004 - DNA gyrase subunit B, at 3,949 to 6,369 _00004 Position (kb) 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2.730 kb on + strandat 2.733 kb on - strandat 2.842 kb on + strandat 2.855 kb on + strandat 2.913 kb on - strandat 3.046 kb on + strand, within MIT1002_00003at 3.051 kb on + strand, within MIT1002_00003at 3.051 kb on + strand, within MIT1002_00003at 3.070 kb on + strand, within MIT1002_00003at 3.181 kb on - strand, within MIT1002_00003at 3.183 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.216 kb on + strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.224 kb on - strand, within MIT1002_00003at 3.249 kb on + strand, within MIT1002_00003at 3.519 kb on + strand, within MIT1002_00003at 3.603 kb on + strand, within MIT1002_00003at 3.679 kb on + strand, within MIT1002_00003

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment A, time point 6
remove
2,730 + +0.8
2,733 - -0.7
2,842 + +1.7
2,855 + -0.0
2,913 - -0.4
3,046 + MIT1002_00003 0.18 -0.2
3,051 + MIT1002_00003 0.18 +1.6
3,051 + MIT1002_00003 0.18 +0.8
3,070 + MIT1002_00003 0.20 -0.4
3,181 - MIT1002_00003 0.30 +1.0
3,183 + MIT1002_00003 0.30 +0.5
3,216 + MIT1002_00003 0.33 +0.8
3,216 + MIT1002_00003 0.33 +2.4
3,216 + MIT1002_00003 0.33 +1.3
3,216 + MIT1002_00003 0.33 +1.6
3,216 + MIT1002_00003 0.33 +0.3
3,216 + MIT1002_00003 0.33 -1.0
3,216 + MIT1002_00003 0.33 +2.9
3,216 + MIT1002_00003 0.33 -0.6
3,216 + MIT1002_00003 0.33 -0.8
3,216 + MIT1002_00003 0.33 -0.0
3,216 + MIT1002_00003 0.33 -2.4
3,216 + MIT1002_00003 0.33 -0.7
3,216 + MIT1002_00003 0.33 +0.6
3,216 + MIT1002_00003 0.33 -0.1
3,216 + MIT1002_00003 0.33 -0.0
3,216 + MIT1002_00003 0.33 +2.0
3,216 + MIT1002_00003 0.33 -1.3
3,224 - MIT1002_00003 0.34 -0.6
3,224 - MIT1002_00003 0.34 -0.2
3,224 - MIT1002_00003 0.34 -1.6
3,224 - MIT1002_00003 0.34 +0.8
3,224 - MIT1002_00003 0.34 +1.1
3,224 - MIT1002_00003 0.34 -0.0
3,224 - MIT1002_00003 0.34 -1.6
3,224 - MIT1002_00003 0.34 -0.6
3,224 - MIT1002_00003 0.34 +0.7
3,224 - MIT1002_00003 0.34 -0.8
3,249 + MIT1002_00003 0.36 -0.0
3,519 + MIT1002_00003 0.61 -2.6
3,603 + MIT1002_00003 0.69 +2.3
3,679 + MIT1002_00003 0.76 +1.8

Or see this region's nucleotide sequence