Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04158 and MIT1002_04159 are separated by 152 nucleotides MIT1002_04159 and MIT1002_04160 are separated by 198 nucleotides
MIT1002_04158: MIT1002_04158 - putative secretion ATPase, PEP-CTERM locus subfamily, at 25,799 to 26,770
_04158
MIT1002_04159: MIT1002_04159 - hypothetical protein, at 26,923 to 27,270
_04159
MIT1002_04160: MIT1002_04160 - hypothetical protein, at 27,469 to 28,086
_04160
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 25.941 kb on - strand, within MIT1002_04158 at 25.941 kb on - strand, within MIT1002_04158 at 25.985 kb on + strand, within MIT1002_04158 at 25.993 kb on - strand, within MIT1002_04158 at 26.072 kb on - strand, within MIT1002_04158 at 26.077 kb on - strand, within MIT1002_04158 at 26.093 kb on + strand, within MIT1002_04158 at 26.201 kb on + strand, within MIT1002_04158 at 26.202 kb on + strand, within MIT1002_04158 at 26.227 kb on - strand, within MIT1002_04158 at 26.227 kb on - strand, within MIT1002_04158 at 26.336 kb on + strand, within MIT1002_04158 at 26.349 kb on + strand, within MIT1002_04158 at 26.370 kb on - strand, within MIT1002_04158 at 26.405 kb on + strand, within MIT1002_04158 at 26.450 kb on + strand, within MIT1002_04158 at 26.463 kb on - strand, within MIT1002_04158 at 26.488 kb on - strand, within MIT1002_04158 at 26.498 kb on - strand, within MIT1002_04158 at 26.505 kb on - strand, within MIT1002_04158 at 26.698 kb on + strand at 26.706 kb on + strand at 26.714 kb on - strand at 26.714 kb on - strand at 26.714 kb on - strand at 26.714 kb on - strand at 26.756 kb on + strand at 26.756 kb on + strand at 26.785 kb on + strand at 26.811 kb on + strand at 26.811 kb on + strand at 26.811 kb on + strand at 26.811 kb on + strand at 26.823 kb on - strand at 26.896 kb on - strand at 26.966 kb on - strand, within MIT1002_04159 at 27.005 kb on + strand, within MIT1002_04159 at 27.040 kb on + strand, within MIT1002_04159 at 27.050 kb on + strand, within MIT1002_04159 at 27.058 kb on + strand, within MIT1002_04159 at 27.058 kb on - strand, within MIT1002_04159 at 27.121 kb on + strand, within MIT1002_04159 at 27.187 kb on + strand, within MIT1002_04159 at 27.221 kb on + strand, within MIT1002_04159 at 27.229 kb on - strand, within MIT1002_04159 at 27.277 kb on + strand at 27.387 kb on + strand at 27.395 kb on + strand at 27.395 kb on - strand at 27.424 kb on + strand at 27.427 kb on + strand at 27.432 kb on - strand at 27.466 kb on + strand at 27.523 kb on + strand at 27.538 kb on - strand, within MIT1002_04160 at 27.543 kb on - strand, within MIT1002_04160 at 27.557 kb on - strand, within MIT1002_04160 at 27.651 kb on + strand, within MIT1002_04160 at 27.651 kb on + strand, within MIT1002_04160 at 27.664 kb on + strand, within MIT1002_04160 at 27.693 kb on - strand, within MIT1002_04160 at 27.714 kb on - strand, within MIT1002_04160 at 27.718 kb on + strand, within MIT1002_04160 at 27.726 kb on - strand, within MIT1002_04160 at 27.746 kb on + strand, within MIT1002_04160 at 27.752 kb on + strand, within MIT1002_04160 at 27.754 kb on - strand, within MIT1002_04160 at 27.759 kb on - strand, within MIT1002_04160 at 27.774 kb on - strand, within MIT1002_04160 at 27.847 kb on - strand, within MIT1002_04160 at 27.958 kb on + strand, within MIT1002_04160 at 28.007 kb on - strand, within MIT1002_04160 at 28.051 kb on - strand at 28.114 kb on + strand at 28.140 kb on - strand at 28.158 kb on - strand at 28.194 kb on - strand at 28.196 kb on + strand at 28.209 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5 remove 25,941 - MIT1002_04158 0.15 +0.6 25,941 - MIT1002_04158 0.15 +0.7 25,985 + MIT1002_04158 0.19 +0.4 25,993 - MIT1002_04158 0.20 +0.6 26,072 - MIT1002_04158 0.28 -0.7 26,077 - MIT1002_04158 0.29 +1.2 26,093 + MIT1002_04158 0.30 +0.3 26,201 + MIT1002_04158 0.41 -0.9 26,202 + MIT1002_04158 0.41 +0.0 26,227 - MIT1002_04158 0.44 +0.6 26,227 - MIT1002_04158 0.44 +0.0 26,336 + MIT1002_04158 0.55 -0.6 26,349 + MIT1002_04158 0.57 -2.2 26,370 - MIT1002_04158 0.59 +1.4 26,405 + MIT1002_04158 0.62 +1.9 26,450 + MIT1002_04158 0.67 -0.2 26,463 - MIT1002_04158 0.68 -1.4 26,488 - MIT1002_04158 0.71 -3.2 26,498 - MIT1002_04158 0.72 -0.3 26,505 - MIT1002_04158 0.73 +0.6 26,698 + -1.5 26,706 + +0.5 26,714 - -0.5 26,714 - +0.4 26,714 - +0.5 26,714 - +0.7 26,756 + +0.4 26,756 + +2.1 26,785 + -0.8 26,811 + +0.1 26,811 + -2.4 26,811 + +1.3 26,811 + +0.2 26,823 - -1.2 26,896 - -0.8 26,966 - MIT1002_04159 0.12 +0.1 27,005 + MIT1002_04159 0.24 +0.0 27,040 + MIT1002_04159 0.34 +0.4 27,050 + MIT1002_04159 0.36 -0.5 27,058 + MIT1002_04159 0.39 +3.1 27,058 - MIT1002_04159 0.39 -0.0 27,121 + MIT1002_04159 0.57 -0.3 27,187 + MIT1002_04159 0.76 -0.9 27,221 + MIT1002_04159 0.86 +0.5 27,229 - MIT1002_04159 0.88 +0.8 27,277 + -1.4 27,387 + +1.9 27,395 + +0.6 27,395 - -0.2 27,424 + -0.1 27,427 + -2.1 27,432 - +0.9 27,466 + -1.2 27,523 + -0.1 27,538 - MIT1002_04160 0.11 +1.7 27,543 - MIT1002_04160 0.12 -0.4 27,557 - MIT1002_04160 0.14 -0.3 27,651 + MIT1002_04160 0.29 -1.5 27,651 + MIT1002_04160 0.29 +1.4 27,664 + MIT1002_04160 0.32 -0.3 27,693 - MIT1002_04160 0.36 +0.5 27,714 - MIT1002_04160 0.40 +0.3 27,718 + MIT1002_04160 0.40 -0.5 27,726 - MIT1002_04160 0.42 +0.0 27,746 + MIT1002_04160 0.45 -1.0 27,752 + MIT1002_04160 0.46 -0.7 27,754 - MIT1002_04160 0.46 +2.6 27,759 - MIT1002_04160 0.47 -3.4 27,774 - MIT1002_04160 0.49 -0.2 27,847 - MIT1002_04160 0.61 -0.6 27,958 + MIT1002_04160 0.79 -1.3 28,007 - MIT1002_04160 0.87 +0.5 28,051 - -0.1 28,114 + +0.2 28,140 - +0.3 28,158 - -1.4 28,194 - +0.7 28,196 + -0.2 28,209 - +0.8
Or see this region's nucleotide sequence