Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03761 and MIT1002_03762 are separated by 215 nucleotides MIT1002_03762 and MIT1002_03763 are separated by 40 nucleotides MIT1002_03763 and MIT1002_03764 are separated by 40 nucleotides
MIT1002_03761: MIT1002_03761 - N-carbamoyl-D-amino acid hydrolase, at 4,202,822 to 4,203,715
_03761
MIT1002_03762: MIT1002_03762 - Transposase DDE domain protein, at 4,203,931 to 4,205,133
_03762
MIT1002_03763: MIT1002_03763 - metallophosphoesterase, DNA ligase-associated, at 4,205,174 to 4,205,878
_03763
MIT1002_03764: MIT1002_03764 - ATP-dependent helicase, at 4,205,919 to 4,208,552
_03764
Position (kb) 4203
4204
4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4202.957 kb on + strand, within MIT1002_03761 at 4202.962 kb on + strand, within MIT1002_03761 at 4202.970 kb on - strand, within MIT1002_03761 at 4202.970 kb on - strand, within MIT1002_03761 at 4203.108 kb on + strand, within MIT1002_03761 at 4203.134 kb on + strand, within MIT1002_03761 at 4203.280 kb on + strand, within MIT1002_03761 at 4203.293 kb on + strand, within MIT1002_03761 at 4203.357 kb on - strand, within MIT1002_03761 at 4203.412 kb on - strand, within MIT1002_03761 at 4203.422 kb on - strand, within MIT1002_03761 at 4203.436 kb on + strand, within MIT1002_03761 at 4203.436 kb on + strand, within MIT1002_03761 at 4203.454 kb on - strand, within MIT1002_03761 at 4203.533 kb on + strand, within MIT1002_03761 at 4203.549 kb on - strand, within MIT1002_03761 at 4203.589 kb on + strand, within MIT1002_03761 at 4203.635 kb on - strand at 4203.637 kb on + strand at 4203.637 kb on + strand at 4203.646 kb on + strand at 4203.695 kb on + strand at 4203.736 kb on - strand at 4203.766 kb on + strand at 4205.215 kb on + strand at 4205.236 kb on + strand at 4205.271 kb on + strand, within MIT1002_03763 at 4205.281 kb on + strand, within MIT1002_03763 at 4205.289 kb on - strand, within MIT1002_03763 at 4205.332 kb on - strand, within MIT1002_03763 at 4205.347 kb on + strand, within MIT1002_03763 at 4205.364 kb on + strand, within MIT1002_03763 at 4205.510 kb on - strand, within MIT1002_03763 at 4205.516 kb on - strand, within MIT1002_03763 at 4205.551 kb on - strand, within MIT1002_03763 at 4205.560 kb on + strand, within MIT1002_03763 at 4205.560 kb on + strand, within MIT1002_03763 at 4205.568 kb on - strand, within MIT1002_03763 at 4205.608 kb on - strand, within MIT1002_03763 at 4205.630 kb on + strand, within MIT1002_03763 at 4205.638 kb on - strand, within MIT1002_03763 at 4205.659 kb on - strand, within MIT1002_03763 at 4205.732 kb on + strand, within MIT1002_03763 at 4205.740 kb on - strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.746 kb on + strand, within MIT1002_03763 at 4205.754 kb on - strand, within MIT1002_03763 at 4205.754 kb on - strand, within MIT1002_03763 at 4206.027 kb on + strand at 4206.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5 remove 4,202,957 + MIT1002_03761 0.15 -0.6 4,202,962 + MIT1002_03761 0.16 +2.1 4,202,970 - MIT1002_03761 0.17 -0.4 4,202,970 - MIT1002_03761 0.17 -1.4 4,203,108 + MIT1002_03761 0.32 -0.6 4,203,134 + MIT1002_03761 0.35 -2.3 4,203,280 + MIT1002_03761 0.51 -0.1 4,203,293 + MIT1002_03761 0.53 -2.0 4,203,357 - MIT1002_03761 0.60 -0.8 4,203,412 - MIT1002_03761 0.66 -0.1 4,203,422 - MIT1002_03761 0.67 -1.6 4,203,436 + MIT1002_03761 0.69 +0.9 4,203,436 + MIT1002_03761 0.69 -1.0 4,203,454 - MIT1002_03761 0.71 -0.9 4,203,533 + MIT1002_03761 0.80 -1.0 4,203,549 - MIT1002_03761 0.81 -2.3 4,203,589 + MIT1002_03761 0.86 -1.7 4,203,635 - +0.1 4,203,637 + -1.8 4,203,637 + +0.4 4,203,646 + -0.8 4,203,695 + -2.2 4,203,736 - -0.5 4,203,766 + +0.4 4,205,215 + +0.4 4,205,236 + -0.4 4,205,271 + MIT1002_03763 0.14 -1.6 4,205,281 + MIT1002_03763 0.15 +0.1 4,205,289 - MIT1002_03763 0.16 -1.0 4,205,332 - MIT1002_03763 0.22 -0.1 4,205,347 + MIT1002_03763 0.25 +0.0 4,205,364 + MIT1002_03763 0.27 +0.8 4,205,510 - MIT1002_03763 0.48 -0.0 4,205,516 - MIT1002_03763 0.49 -0.8 4,205,551 - MIT1002_03763 0.53 -0.2 4,205,560 + MIT1002_03763 0.55 -2.8 4,205,560 + MIT1002_03763 0.55 -0.1 4,205,568 - MIT1002_03763 0.56 +2.3 4,205,608 - MIT1002_03763 0.62 +0.5 4,205,630 + MIT1002_03763 0.65 +0.5 4,205,638 - MIT1002_03763 0.66 -0.1 4,205,659 - MIT1002_03763 0.69 -1.2 4,205,732 + MIT1002_03763 0.79 -1.0 4,205,740 - MIT1002_03763 0.80 +0.6 4,205,746 + MIT1002_03763 0.81 -0.1 4,205,746 + MIT1002_03763 0.81 -0.6 4,205,746 + MIT1002_03763 0.81 +0.6 4,205,746 + MIT1002_03763 0.81 +1.2 4,205,754 - MIT1002_03763 0.82 -0.9 4,205,754 - MIT1002_03763 0.82 -2.5 4,206,027 + +1.1 4,206,085 + -2.7
Or see this region's nucleotide sequence