Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03725

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
4,158,973	+		MIT1002_03723	0.85	+0.3
4,159,033	+				-0.6
4,159,095	+				+0.7
4,159,130	-				-1.6
4,159,178	-				+1.1
4,159,223	-				-3.6
4,159,234	-				+0.1
4,159,326	+		MIT1002_03724	0.19	+0.8
4,159,463	+		MIT1002_03724	0.39	-1.5
4,159,541	+		MIT1002_03724	0.50	+0.8
4,159,548	+		MIT1002_03724	0.51	+1.9
4,159,548	+		MIT1002_03724	0.51	+1.1
4,159,548	+		MIT1002_03724	0.51	-1.4
4,159,605	+		MIT1002_03724	0.60	+1.5
4,159,638	+		MIT1002_03724	0.65	+0.5
4,159,638	+		MIT1002_03724	0.65	+0.2
4,159,646	-		MIT1002_03724	0.66	+1.3
4,159,646	-		MIT1002_03724	0.66	-0.3
4,159,683	+		MIT1002_03724	0.71	-1.3
4,159,873	-				-2.1
4,159,883	-				-0.3
4,160,001	+				-0.1
4,160,009	-				+0.1
4,160,037	-				-0.6
4,160,039	+				-0.0
4,160,054	+				+1.6
4,160,054	-				+0.7
4,160,084	-				-0.1
4,160,215	+		MIT1002_03725	0.11	+1.8
4,160,252	+		MIT1002_03725	0.13	+0.1
4,160,276	+		MIT1002_03725	0.14	-1.7
4,160,284	-		MIT1002_03725	0.14	+0.6
4,160,307	+		MIT1002_03725	0.15	+0.0
4,160,307	+		MIT1002_03725	0.15	-0.2
4,160,315	-		MIT1002_03725	0.16	-0.4
4,160,320	-		MIT1002_03725	0.16	+0.7
4,160,344	+		MIT1002_03725	0.17	-0.1
4,160,354	+		MIT1002_03725	0.17	-0.7
4,160,354	+		MIT1002_03725	0.17	+0.3
4,160,354	+		MIT1002_03725	0.17	+0.9
4,160,354	+		MIT1002_03725	0.17	-1.3
4,160,354	+		MIT1002_03725	0.17	+2.5
4,160,362	-		MIT1002_03725	0.18	+0.9
4,160,392	+		MIT1002_03725	0.19	+0.6
4,160,392	+		MIT1002_03725	0.19	+0.4
4,160,400	+		MIT1002_03725	0.19	+0.7
4,160,400	+		MIT1002_03725	0.19	+0.2
4,160,400	+		MIT1002_03725	0.19	+0.0
4,160,408	+		MIT1002_03725	0.20	-0.3
4,160,416	-		MIT1002_03725	0.20	-2.1
4,160,424	+		MIT1002_03725	0.21	+0.2
4,160,424	+		MIT1002_03725	0.21	-0.8
4,160,432	-		MIT1002_03725	0.21	+1.6
4,160,434	+		MIT1002_03725	0.21	+0.5
4,160,442	-		MIT1002_03725	0.21	-0.5
4,160,442	-		MIT1002_03725	0.21	-0.7
4,160,442	-		MIT1002_03725	0.21	+0.1
4,160,442	-		MIT1002_03725	0.21	+1.0
4,160,496	-		MIT1002_03725	0.24	-0.6
4,160,496	-		MIT1002_03725	0.24	+0.8
4,160,542	+		MIT1002_03725	0.26	-2.0
4,160,542	+		MIT1002_03725	0.26	+0.0
4,160,550	-		MIT1002_03725	0.26	-1.9
4,160,550	-		MIT1002_03725	0.26	-2.1
4,160,550	-		MIT1002_03725	0.26	-0.9
4,160,550	-		MIT1002_03725	0.26	+0.5
4,160,600	+		MIT1002_03725	0.28	-2.2
4,160,631	-		MIT1002_03725	0.30	-0.4
4,160,657	-		MIT1002_03725	0.31	+1.7
4,160,676	-		MIT1002_03725	0.32	+0.5
4,160,680	+		MIT1002_03725	0.32	-1.7
4,160,680	+		MIT1002_03725	0.32	-1.6
4,160,683	-		MIT1002_03725	0.32	+2.7
4,160,688	-		MIT1002_03725	0.32	-1.3
4,160,688	-		MIT1002_03725	0.32	-0.5
4,160,754	+		MIT1002_03725	0.35	+2.0
4,160,796	+		MIT1002_03725	0.37	+1.8
4,160,804	-		MIT1002_03725	0.38	-1.9
4,160,812	-		MIT1002_03725	0.38	+0.3
4,160,833	-		MIT1002_03725	0.39	+0.3
4,160,859	+		MIT1002_03725	0.40	-0.3
4,160,925	+		MIT1002_03725	0.43	+0.1
4,160,925	-		MIT1002_03725	0.43	+0.1
4,160,926	+		MIT1002_03725	0.43	+0.8
4,160,934	-		MIT1002_03725	0.44	+1.2
4,161,132	+		MIT1002_03725	0.52	-1.1
4,161,140	-		MIT1002_03725	0.53	-1.1
4,161,234	-		MIT1002_03725	0.57	+0.5
4,161,264	+		MIT1002_03725	0.58	-1.3
4,161,272	-		MIT1002_03725	0.59	+0.9
4,161,272	-		MIT1002_03725	0.59	+1.1
4,161,299	+		MIT1002_03725	0.60	+0.1
4,161,309	-		MIT1002_03725	0.60	-1.0
4,161,317	-		MIT1002_03725	0.61	+1.9
4,161,345	+		MIT1002_03725	0.62	+0.9
4,161,357	+		MIT1002_03725	0.63	-2.0
4,161,363	-		MIT1002_03725	0.63	+0.8
4,161,438	+		MIT1002_03725	0.66	-0.7
4,161,441	-		MIT1002_03725	0.66	-1.7
4,161,495	-		MIT1002_03725	0.69	+0.2
4,161,560	+		MIT1002_03725	0.72	-1.0
4,161,600	-		MIT1002_03725	0.74	-0.1
4,161,640	-		MIT1002_03725	0.75	+0.7
4,161,679	+		MIT1002_03725	0.77	-0.3
4,161,709	+		MIT1002_03725	0.79	+2.9
4,161,820	+		MIT1002_03725	0.84	+0.9
4,161,841	+		MIT1002_03725	0.85	-0.6
4,161,873	+		MIT1002_03725	0.86	-0.5
4,162,003	+				+1.3
4,162,006	-				+0.6
4,162,055	+				-0.0
4,162,056	+				-0.1
4,162,064	-				+1.1
4,162,079	+				+1.1
4,162,079	+				-0.3
4,162,087	-				+0.7
4,162,087	-				-0.6
4,162,381	-				-0.5
4,162,411	-				+0.4
4,162,411	-				-0.3
4,162,424	+				+0.1
4,162,616	-		MIT1002_03726	0.18	+0.2
4,162,721	-		MIT1002_03726	0.29	+0.3
4,162,731	+		MIT1002_03726	0.30	-0.1
4,162,736	+		MIT1002_03726	0.30	-1.1
4,162,752	-		MIT1002_03726	0.32	+1.1
4,162,757	+		MIT1002_03726	0.32	+0.3
4,162,790	+		MIT1002_03726	0.36	-0.9
4,162,794	+		MIT1002_03726	0.36	+1.3
4,162,802	-		MIT1002_03726	0.37	-0.5
4,162,802	-		MIT1002_03726	0.37	+0.7
4,162,849	+		MIT1002_03726	0.42	+0.3
4,162,849	+		MIT1002_03726	0.42	+0.1
4,162,849	+		MIT1002_03726	0.42	+0.3
4,162,857	-		MIT1002_03726	0.43	+1.1
4,162,859	-		MIT1002_03726	0.43	-2.0
4,162,936	+		MIT1002_03726	0.51	+0.7
4,162,960	+		MIT1002_03726	0.53	-0.8
4,162,961	+		MIT1002_03726	0.53	-0.9
4,162,961	+		MIT1002_03726	0.53	-0.7
4,162,961	+		MIT1002_03726	0.53	-1.2
4,162,961	+		MIT1002_03726	0.53	+0.4
4,162,969	-		MIT1002_03726	0.54	-0.5
4,163,028	-		MIT1002_03726	0.60	+1.8
4,163,060	+		MIT1002_03726	0.64	+0.5
4,163,068	-		MIT1002_03726	0.64	+0.7
4,163,109	+		MIT1002_03726	0.69	-0.6
4,163,147	+		MIT1002_03726	0.73	+0.3
4,163,158	+		MIT1002_03726	0.74	+0.7
4,163,179	+		MIT1002_03726	0.76	-0.7