Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03312

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
3,694,676	+		MIT1002_03309	0.85	-0.3
3,694,676	+		MIT1002_03309	0.85	+0.0
3,694,676	+		MIT1002_03309	0.85	-1.3
3,694,684	-		MIT1002_03309	0.86	+0.1
3,694,684	-		MIT1002_03309	0.86	+0.8
3,694,684	-		MIT1002_03309	0.86	-2.2
3,694,696	+		MIT1002_03309	0.87	+1.5
3,694,702	+		MIT1002_03309	0.88	+0.4
3,694,704	-		MIT1002_03309	0.88	-0.4
3,694,725	+				+0.1
3,694,764	+				+0.4
3,694,777	+				+0.7
3,694,777	+				-1.7
3,694,798	-				-0.6
3,694,800	+				+0.9
3,694,800	+				+0.0
3,694,808	-				-0.1
3,694,808	-				+0.3
3,694,820	-				-0.7
3,694,829	-				+0.9
3,694,878	-				-0.2
3,694,964	-		MIT1002_03310	0.17	-0.4
3,695,061	-		MIT1002_03310	0.48	-1.3
3,695,080	+		MIT1002_03310	0.54	-0.3
3,695,088	-		MIT1002_03310	0.56	+1.0
3,695,088	-		MIT1002_03310	0.56	+1.1
3,695,146	+		MIT1002_03310	0.75	+1.1
3,695,180	+		MIT1002_03310	0.85	+2.1
3,695,258	+				-0.6
3,695,273	+				+0.1
3,695,312	-				-0.7
3,695,320	+				+0.8
3,695,320	+				-0.2
3,695,328	-		MIT1002_03311	0.12	+0.1
3,695,351	+		MIT1002_03311	0.27	-0.2
3,695,359	-		MIT1002_03311	0.33	-0.6
3,695,359	-		MIT1002_03311	0.33	-0.3
3,695,415	-		MIT1002_03311	0.71	+1.9
3,695,460	-				+0.2
3,695,667	+				+0.0
3,695,669	+				-0.1
3,695,675	-				+0.2
3,695,713	+		MIT1002_03312	0.13	+0.7
3,695,811	+		MIT1002_03312	0.24	-0.1
3,695,813	+		MIT1002_03312	0.24	-0.8
3,695,830	+		MIT1002_03312	0.26	-0.3
3,695,956	+		MIT1002_03312	0.40	-0.8
3,695,968	+		MIT1002_03312	0.42	+0.1
3,696,072	-		MIT1002_03312	0.53	+1.1
3,696,149	+		MIT1002_03312	0.62	-0.5
3,696,181	+		MIT1002_03312	0.65	-1.5
3,696,182	+		MIT1002_03312	0.65	-0.8
3,696,190	-		MIT1002_03312	0.66	+1.0
3,696,264	+		MIT1002_03312	0.74	-0.5
3,696,272	-		MIT1002_03312	0.75	-2.2
3,696,521	+				-0.5
3,696,529	-				-0.8
3,696,658	-				-1.9
3,696,699	-				+0.3
3,696,735	+				+0.2
3,696,763	+		MIT1002_03313	0.13	-5.8
3,696,817	-		MIT1002_03313	0.19	-1.7
3,696,817	-		MIT1002_03313	0.19	-0.1
3,696,831	+		MIT1002_03313	0.20	+0.6
3,696,860	+		MIT1002_03313	0.24	-0.1
3,696,881	-		MIT1002_03313	0.26	-1.0
3,696,916	+		MIT1002_03313	0.30	+0.5
3,696,929	-		MIT1002_03313	0.32	+0.5
3,696,991	+		MIT1002_03313	0.39	+0.3
3,697,065	-		MIT1002_03313	0.48	-1.1
3,697,066	+		MIT1002_03313	0.48	+0.4
3,697,073	+		MIT1002_03313	0.49	+0.4
3,697,077	-		MIT1002_03313	0.49	+2.0
3,697,096	+		MIT1002_03313	0.51	+0.7
3,697,111	+		MIT1002_03313	0.53	+0.6
3,697,111	+		MIT1002_03313	0.53	-0.6
3,697,112	-		MIT1002_03313	0.53	-0.0
3,697,119	-		MIT1002_03313	0.54	+2.1
3,697,119	-		MIT1002_03313	0.54	+0.5
3,697,119	-		MIT1002_03313	0.54	+0.4
3,697,119	-		MIT1002_03313	0.54	-0.0
3,697,135	+		MIT1002_03313	0.56	+1.9
3,697,148	-		MIT1002_03313	0.58	-0.9
3,697,185	-		MIT1002_03313	0.62	-0.4
3,697,237	+		MIT1002_03313	0.68	+0.0
3,697,237	+		MIT1002_03313	0.68	-2.3
3,697,237	+		MIT1002_03313	0.68	+0.7
3,697,237	+		MIT1002_03313	0.68	+0.6
3,697,237	+		MIT1002_03313	0.68	-0.9
3,697,237	+		MIT1002_03313	0.68	+0.7
3,697,243	-		MIT1002_03313	0.69	+0.7
3,697,245	-		MIT1002_03313	0.69	+0.5
3,697,245	-		MIT1002_03313	0.69	+0.5
3,697,245	-		MIT1002_03313	0.69	+1.5
3,697,245	-		MIT1002_03313	0.69	-0.9
3,697,252	+		MIT1002_03313	0.70	-0.9
3,697,260	-		MIT1002_03313	0.71	+1.7
3,697,276	-		MIT1002_03313	0.73	-0.4
3,697,319	-		MIT1002_03313	0.78	-1.0
3,697,334	-		MIT1002_03313	0.79	+0.6
3,697,335	+		MIT1002_03313	0.79	+1.4
3,697,340	+		MIT1002_03313	0.80	+0.5
3,697,340	+		MIT1002_03313	0.80	-2.3
3,697,340	+		MIT1002_03313	0.80	-1.1
3,697,341	+		MIT1002_03313	0.80	+1.0
3,697,341	+		MIT1002_03313	0.80	+2.5
3,697,341	-		MIT1002_03313	0.80	+0.1
3,697,343	-		MIT1002_03313	0.80	+0.9
3,697,343	-		MIT1002_03313	0.80	+0.5
3,697,343	-		MIT1002_03313	0.80	+1.1
3,697,348	-		MIT1002_03313	0.81	+1.1
3,697,348	-		MIT1002_03313	0.81	-0.4
3,697,348	-		MIT1002_03313	0.81	+0.6
3,697,348	-		MIT1002_03313	0.81	+0.1
3,697,348	-		MIT1002_03313	0.81	-2.6
3,697,348	-		MIT1002_03313	0.81	+0.2
3,697,348	-		MIT1002_03313	0.81	-0.1
3,697,348	-		MIT1002_03313	0.81	-0.0
3,697,348	-		MIT1002_03313	0.81	+0.8
3,697,348	-		MIT1002_03313	0.81	-0.5
3,697,348	-		MIT1002_03313	0.81	-0.8
3,697,348	-		MIT1002_03313	0.81	-0.4
3,697,350	+		MIT1002_03313	0.81	+1.8
3,697,362	-		MIT1002_03313	0.83	+0.6
3,697,388	+		MIT1002_03313	0.86	-0.6
3,697,393	+		MIT1002_03313	0.86	+0.3
3,697,393	+		MIT1002_03313	0.86	+1.1
3,697,398	+		MIT1002_03313	0.87	-0.0
3,697,398	+		MIT1002_03313	0.87	+0.7
3,697,401	-		MIT1002_03313	0.87	+0.1
3,697,404	+		MIT1002_03313	0.87	+1.0
3,697,407	-		MIT1002_03313	0.88	-0.8
3,697,407	-		MIT1002_03313	0.88	+1.3
3,697,407	-		MIT1002_03313	0.88	-2.2
3,697,412	-		MIT1002_03313	0.88	+2.3
3,697,412	-		MIT1002_03313	0.88	+1.2
3,697,413	-		MIT1002_03313	0.89	+0.6
3,697,419	-		MIT1002_03313	0.89	+0.4
3,697,426	+				+0.3
3,697,426	+				-1.3
3,697,434	-				+0.1
3,697,434	-				-0.1
3,697,450	+				-2.3
3,697,455	-				+1.1
3,697,458	-				-0.0
3,697,458	-				-1.2
3,697,468	-				+0.2
3,697,468	-				-3.2
3,697,482	-				-2.0
3,697,484	+				-0.2
3,697,493	+				+0.8