Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03297

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
3,675,937	+		MIT1002_03295	0.83	+0.5
3,675,965	+				+0.3
3,676,005	-				+0.5
3,676,005	-				+0.2
3,676,201	-		MIT1002_03296	0.15	-0.1
3,676,201	-		MIT1002_03296	0.15	+0.2
3,676,201	-		MIT1002_03296	0.15	+1.0
3,676,201	-		MIT1002_03296	0.15	+1.7
3,676,201	-		MIT1002_03296	0.15	-1.9
3,676,240	-		MIT1002_03296	0.22	+0.2
3,676,308	+		MIT1002_03296	0.32	-0.5
3,676,313	+		MIT1002_03296	0.33	+1.1
3,676,316	-		MIT1002_03296	0.33	+0.0
3,676,317	+		MIT1002_03296	0.34	+0.1
3,676,335	-		MIT1002_03296	0.36	+0.1
3,676,354	+		MIT1002_03296	0.39	+1.2
3,676,354	+		MIT1002_03296	0.39	-0.3
3,676,371	+		MIT1002_03296	0.42	-0.1
3,676,383	+		MIT1002_03296	0.44	+0.5
3,676,477	+		MIT1002_03296	0.59	+0.9
3,676,506	+		MIT1002_03296	0.63	-0.2
3,676,514	-		MIT1002_03296	0.64	-2.0
3,676,521	-		MIT1002_03296	0.66	+1.3
3,676,562	-		MIT1002_03296	0.72	+0.3
3,676,564	+		MIT1002_03296	0.72	-0.9
3,676,644	-		MIT1002_03296	0.85	-0.3
3,676,644	-		MIT1002_03296	0.85	+0.3
3,676,688	-				-2.3
3,676,763	-				-2.6
3,676,791	-				+1.3
3,676,805	+				+1.4
3,676,807	-				+0.2
3,676,807	-				-2.2
3,676,808	+				+1.3
3,676,828	-				+0.9
3,676,915	+				-0.8
3,676,949	+				-0.3
3,676,959	+				-0.8
3,676,965	-				-1.2
3,676,967	-				-3.6
3,677,008	-				-1.2
3,677,057	-		MIT1002_03297	0.12	-1.1
3,677,067	+		MIT1002_03297	0.13	+0.3
3,677,081	+		MIT1002_03297	0.14	+0.4
3,677,081	+		MIT1002_03297	0.14	-1.1
3,677,081	+		MIT1002_03297	0.14	-1.3
3,677,081	+		MIT1002_03297	0.14	-1.4
3,677,081	+		MIT1002_03297	0.14	-0.0
3,677,081	+		MIT1002_03297	0.14	+0.1
3,677,089	-		MIT1002_03297	0.15	+0.1
3,677,089	-		MIT1002_03297	0.15	+1.8
3,677,089	-		MIT1002_03297	0.15	+0.6
3,677,089	-		MIT1002_03297	0.15	-1.5
3,677,089	-		MIT1002_03297	0.15	-0.3
3,677,089	-		MIT1002_03297	0.15	+0.3
3,677,089	-		MIT1002_03297	0.15	-0.5
3,677,089	-		MIT1002_03297	0.15	-0.6
3,677,094	+		MIT1002_03297	0.15	+0.6
3,677,123	+		MIT1002_03297	0.18	+0.2
3,677,202	+		MIT1002_03297	0.25	-0.7
3,677,210	-		MIT1002_03297	0.26	-1.0
3,677,264	-		MIT1002_03297	0.30	+1.4
3,677,264	-		MIT1002_03297	0.30	-0.4
3,677,272	+		MIT1002_03297	0.31	+0.6
3,677,282	+		MIT1002_03297	0.32	-3.0
3,677,290	-		MIT1002_03297	0.33	+0.2
3,677,290	-		MIT1002_03297	0.33	+1.4
3,677,290	-		MIT1002_03297	0.33	-0.1
3,677,507	+		MIT1002_03297	0.51	+0.5
3,677,569	-		MIT1002_03297	0.57	-1.1
3,677,618	+		MIT1002_03297	0.61	-2.6
3,677,630	-		MIT1002_03297	0.62	+1.2
3,677,655	+		MIT1002_03297	0.64	+0.3
3,677,687	-		MIT1002_03297	0.67	-0.6
3,677,711	+		MIT1002_03297	0.69	+0.7
3,677,719	-		MIT1002_03297	0.70	+0.4
3,677,719	-		MIT1002_03297	0.70	+0.6
3,677,719	-		MIT1002_03297	0.70	+0.3
3,677,719	-		MIT1002_03297	0.70	+0.5
3,677,719	-		MIT1002_03297	0.70	+0.3
3,677,721	+		MIT1002_03297	0.70	-0.0
3,677,744	-		MIT1002_03297	0.72	+1.0
3,677,768	-		MIT1002_03297	0.74	-0.4
3,677,777	+		MIT1002_03297	0.75	+0.8
3,677,784	+		MIT1002_03297	0.76	+0.1
3,677,784	+		MIT1002_03297	0.76	-2.2
3,677,785	-		MIT1002_03297	0.76	+0.2
3,677,885	+		MIT1002_03297	0.84	-2.2
3,677,893	-		MIT1002_03297	0.85	-1.7
3,677,893	-		MIT1002_03297	0.85	-0.2
3,677,908	-		MIT1002_03297	0.86	-0.2
3,677,974	+				+0.2
3,677,975	+				-1.6
3,677,978	-				+0.0
3,678,004	+				-0.1
3,678,139	+				+2.5
3,678,139	+				+0.8
3,678,147	-				+0.3
3,678,147	-				+1.9
3,678,147	-				-0.1
3,678,408	+		MIT1002_03298	0.16	+0.4
3,678,437	-		MIT1002_03298	0.18	+0.1
3,678,447	+		MIT1002_03298	0.19	-2.1
3,678,452	+		MIT1002_03298	0.19	-0.5
3,678,521	+		MIT1002_03298	0.25	-3.1
3,678,529	-		MIT1002_03298	0.25	-0.9
3,678,531	+		MIT1002_03298	0.26	-3.3
3,678,582	-		MIT1002_03298	0.29	-0.3
3,678,766	+		MIT1002_03298	0.44	-0.7
3,678,940	+		MIT1002_03298	0.57	+1.2
3,678,940	+		MIT1002_03298	0.57	+0.7
3,678,962	-		MIT1002_03298	0.59	-1.5
3,678,993	-		MIT1002_03298	0.61	-2.5
3,678,995	+		MIT1002_03298	0.61	+0.3
3,678,997	+		MIT1002_03298	0.61	+0.4
3,678,997	+		MIT1002_03298	0.61	-0.3
3,678,997	+		MIT1002_03298	0.61	-1.1
3,678,997	+		MIT1002_03298	0.61	-1.5
3,678,997	+		MIT1002_03298	0.61	-0.1
3,678,997	+		MIT1002_03298	0.61	+0.2
3,678,997	+		MIT1002_03298	0.61	+0.7
3,679,005	-		MIT1002_03298	0.62	+1.4
3,679,005	-		MIT1002_03298	0.62	-0.9
3,679,005	-		MIT1002_03298	0.62	+0.1