Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01980

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
2,213,797	+		MIT1002_01979	0.27	-3.8
2,213,805	-		MIT1002_01979	0.28	-1.7
2,213,852	+		MIT1002_01979	0.32	-3.5
2,213,852	-		MIT1002_01979	0.32	-2.0
2,213,855	-		MIT1002_01979	0.33	-2.2
2,213,864	+		MIT1002_01979	0.33	-3.0
2,213,872	-		MIT1002_01979	0.34	-2.4
2,213,883	+		MIT1002_01979	0.35	-3.8
2,213,891	-		MIT1002_01979	0.36	-0.5
2,213,954	+		MIT1002_01979	0.41	-3.0
2,213,954	+		MIT1002_01979	0.41	-3.9
2,213,970	+		MIT1002_01979	0.43	-2.4
2,214,012	-		MIT1002_01979	0.47	-2.2
2,214,037	+		MIT1002_01979	0.49	-2.1
2,214,057	+		MIT1002_01979	0.50	-3.5
2,214,100	+		MIT1002_01979	0.54	-2.4
2,214,116	+		MIT1002_01979	0.56	-2.7
2,214,247	+		MIT1002_01979	0.67	-2.0
2,214,274	+		MIT1002_01979	0.70	-3.0
2,214,307	+		MIT1002_01979	0.73	-2.2
2,214,316	+		MIT1002_01979	0.73	-3.5
2,214,322	-		MIT1002_01979	0.74	-1.4
2,214,340	+		MIT1002_01979	0.76	-3.0
2,214,340	+		MIT1002_01979	0.76	-4.1
2,214,340	+		MIT1002_01979	0.76	-1.4
2,214,340	+		MIT1002_01979	0.76	-3.0
2,214,348	-		MIT1002_01979	0.76	-3.2
2,214,348	-		MIT1002_01979	0.76	-4.1
2,214,348	-		MIT1002_01979	0.76	-3.9
2,214,475	-		MIT1002_01979	0.87	-3.6
2,214,552	+				-3.0
2,214,581	-				+0.1
2,214,593	-				-3.6
2,214,616	+				+1.2
2,214,616	-				+0.2
2,214,624	-				+0.8
2,214,652	+				-0.7
2,214,652	+				-0.7
2,214,652	+				+0.4
2,214,660	-				-1.4
2,214,709	-				+1.2
2,214,756	-				+0.6
2,214,769	-				+0.4
2,214,777	+				+0.1
2,214,777	+				-0.2
2,214,865	-		MIT1002_01980	0.13	+0.1
2,214,914	-		MIT1002_01980	0.19	-0.2
2,215,065	-		MIT1002_01980	0.37	+0.9
2,215,067	-		MIT1002_01980	0.37	-1.5
2,215,080	-		MIT1002_01980	0.39	-0.1
2,215,085	+		MIT1002_01980	0.39	+0.6
2,215,108	+		MIT1002_01980	0.42	-0.6
2,215,108	+		MIT1002_01980	0.42	-1.6
2,215,158	-		MIT1002_01980	0.48	+0.0
2,215,170	-		MIT1002_01980	0.49	-0.0
2,215,268	-		MIT1002_01980	0.61	-0.1
2,215,268	-		MIT1002_01980	0.61	+0.3
2,215,345	+		MIT1002_01980	0.70	+1.1
2,215,369	+		MIT1002_01980	0.73	+0.0
2,215,377	-		MIT1002_01980	0.73	-1.3
2,215,408	+		MIT1002_01980	0.77	-1.4
2,215,517	-				+1.3
2,215,620	-				-0.3
2,215,631	+				-2.1
2,215,633	+				-1.0
2,215,643	+				+0.1
2,215,651	+				-2.3
2,215,659	-				-0.1
2,215,659	-				-1.3
2,215,696	+				+0.2
2,215,813	+				-1.7
2,215,821	-				-0.4
2,215,821	-				-0.7
2,215,821	-				+1.5
2,215,821	-				+0.8
2,215,890	+				-2.4
2,215,999	-				-3.4
2,216,018	+				-2.4
2,216,018	+				-2.1
2,216,035	+		MIT1002_01981	0.11	-2.6
2,216,059	+		MIT1002_01981	0.12	-2.5
2,216,117	+		MIT1002_01981	0.16	+0.3
2,216,120	-		MIT1002_01981	0.16	-4.0
2,216,167	-		MIT1002_01981	0.19	-0.3
2,216,176	+		MIT1002_01981	0.20	-1.7
2,216,184	+		MIT1002_01981	0.20	-1.9
2,216,184	+		MIT1002_01981	0.20	-3.1
2,216,184	+		MIT1002_01981	0.20	-0.7
2,216,184	+		MIT1002_01981	0.20	-3.1
2,216,184	-		MIT1002_01981	0.20	-2.7
2,216,186	+		MIT1002_01981	0.21	-0.5
2,216,186	+		MIT1002_01981	0.21	-4.0
2,216,189	+		MIT1002_01981	0.21	-1.2
2,216,192	-		MIT1002_01981	0.21	-2.6
2,216,197	-		MIT1002_01981	0.21	-1.0
2,216,197	-		MIT1002_01981	0.21	-2.0
2,216,216	+		MIT1002_01981	0.23	-2.2
2,216,216	+		MIT1002_01981	0.23	-1.6
2,216,269	-		MIT1002_01981	0.26	-1.6
2,216,487	-		MIT1002_01981	0.40	-3.2
2,216,497	+		MIT1002_01981	0.41	-5.8
2,216,544	+		MIT1002_01981	0.44	-1.4
2,216,567	+		MIT1002_01981	0.46	-2.0
2,216,587	-		MIT1002_01981	0.47	-0.3