Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01678

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
1,858,822	+		MIT1002_01677	0.78	-0.5
1,858,865	+		MIT1002_01677	0.79	-0.8
1,858,873	-		MIT1002_01677	0.79	+0.4
1,859,014	+		MIT1002_01677	0.83	+0.3
1,859,031	+		MIT1002_01677	0.83	-1.3
1,859,049	+		MIT1002_01677	0.84	-0.6
1,859,049	+		MIT1002_01677	0.84	-1.1
1,859,075	+		MIT1002_01677	0.84	-0.7
1,859,079	+		MIT1002_01677	0.84	-0.9
1,859,111	-		MIT1002_01677	0.85	+0.5
1,859,113	+		MIT1002_01677	0.85	+0.6
1,859,121	-		MIT1002_01677	0.86	+0.4
1,859,162	-		MIT1002_01677	0.87	-0.3
1,859,200	+		MIT1002_01677	0.88	+1.4
1,859,333	-				-0.7
1,859,333	-				+0.3
1,859,406	+				-1.0
1,859,440	+				+0.1
1,859,448	-				+0.0
1,859,486	+				-3.6
1,859,527	+				+0.4
1,859,606	+				-0.6
1,859,611	+				+0.3
1,859,640	-				+0.9
1,859,662	+				+0.1
1,859,670	-				-2.5
1,859,670	-				-1.1
1,859,774	+				+1.7
1,859,806	+				+0.8
1,859,806	-				-0.2
1,859,867	+				-1.8
1,859,967	+		MIT1002_01678	0.14	+0.3
1,859,975	-		MIT1002_01678	0.15	-0.6
1,860,026	+		MIT1002_01678	0.20	+0.7
1,860,026	+		MIT1002_01678	0.20	-2.4
1,860,036	+		MIT1002_01678	0.21	-1.0
1,860,036	+		MIT1002_01678	0.21	-1.2
1,860,044	-		MIT1002_01678	0.21	+1.0
1,860,044	-		MIT1002_01678	0.21	-2.7
1,860,148	-		MIT1002_01678	0.31	-1.5
1,860,161	+		MIT1002_01678	0.32	-0.2
1,860,162	+		MIT1002_01678	0.32	+1.2
1,860,162	+		MIT1002_01678	0.32	+1.7
1,860,162	+		MIT1002_01678	0.32	-3.0
1,860,165	-		MIT1002_01678	0.33	-0.4
1,860,169	-		MIT1002_01678	0.33	+0.1
1,860,170	-		MIT1002_01678	0.33	+0.4
1,860,170	-		MIT1002_01678	0.33	+0.3
1,860,170	-		MIT1002_01678	0.33	+0.1
1,860,178	-		MIT1002_01678	0.34	+0.1
1,860,178	-		MIT1002_01678	0.34	-0.3
1,860,190	-		MIT1002_01678	0.35	+0.9
1,860,273	+		MIT1002_01678	0.43	+0.2
1,860,322	+		MIT1002_01678	0.47	-0.5
1,860,337	-		MIT1002_01678	0.49	-0.1
1,860,349	+		MIT1002_01678	0.50	+0.0
1,860,349	+		MIT1002_01678	0.50	+2.2
1,860,349	+		MIT1002_01678	0.50	+0.2
1,860,357	-		MIT1002_01678	0.51	+0.1
1,860,357	-		MIT1002_01678	0.51	-0.2
1,860,368	-		MIT1002_01678	0.52	-1.2
1,860,431	+		MIT1002_01678	0.57	-2.2
1,860,441	+		MIT1002_01678	0.58	+0.1
1,860,456	-		MIT1002_01678	0.60	-0.7
1,860,480	+		MIT1002_01678	0.62	+0.4
1,860,568	-		MIT1002_01678	0.70	+1.8
1,860,595	+		MIT1002_01678	0.73	+0.3
1,860,596	-		MIT1002_01678	0.73	+0.3
1,860,601	-		MIT1002_01678	0.73	+0.9
1,860,621	+		MIT1002_01678	0.75	-0.2
1,860,634	-		MIT1002_01678	0.76	-0.3
1,860,700	-		MIT1002_01678	0.83	-0.8
1,860,707	-		MIT1002_01678	0.83	-0.6
1,860,799	+				+0.2
1,860,807	-				-1.0
1,860,822	+				+1.8
1,860,830	-				-1.2
1,860,830	-				-0.1
1,860,830	-				+0.8
1,860,830	-				-0.5
1,860,935	-				+0.4
1,860,949	+				-0.4
1,860,957	-				+0.2
1,861,115	-		MIT1002_01679	0.12	+0.2
1,861,120	-		MIT1002_01679	0.13	-1.1
1,861,143	+		MIT1002_01679	0.19	+1.7
1,861,151	-		MIT1002_01679	0.20	-1.2
1,861,211	-		MIT1002_01679	0.35	-0.1
1,861,221	+		MIT1002_01679	0.37	-0.4
1,861,221	+		MIT1002_01679	0.37	+0.2
1,861,221	+		MIT1002_01679	0.37	+0.0
1,861,229	-		MIT1002_01679	0.39	-1.8
1,861,236	+		MIT1002_01679	0.41	-0.5
1,861,320	+		MIT1002_01679	0.61	+0.0
1,861,338	-		MIT1002_01679	0.65	-0.1
1,861,412	-		MIT1002_01679	0.83	-0.4
1,861,441	+		MIT1002_01679	0.90	-1.3
1,861,479	+				-0.7
1,861,479	+				-2.3
1,861,479	+				-0.0
1,861,479	+				-1.1
1,861,479	+				+1.2
1,861,487	-				+0.4
1,861,556	+				-0.1
1,861,566	+				-0.2
1,861,586	-				-2.3
1,861,623	-				-0.5
1,861,679	+				+0.2
1,861,791	+				-0.2
1,861,799	-				+2.6
1,861,799	-				-1.0
1,861,799	-				+0.1
1,861,832	+				+0.8
1,861,843	+				+0.0
1,861,851	+				-2.0