Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01619

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
1,783,159	+		MIT1002_01618	0.50	-0.1
1,783,173	+		MIT1002_01618	0.51	+1.6
1,783,211	+		MIT1002_01618	0.53	+0.2
1,783,245	-		MIT1002_01618	0.55	-0.2
1,783,251	+		MIT1002_01618	0.55	-0.1
1,783,251	+		MIT1002_01618	0.55	-0.9
1,783,307	+		MIT1002_01618	0.58	-0.4
1,783,339	-		MIT1002_01618	0.60	-0.5
1,783,363	+		MIT1002_01618	0.61	+0.2
1,783,388	+		MIT1002_01618	0.62	+0.4
1,783,388	+		MIT1002_01618	0.62	+2.1
1,783,407	+		MIT1002_01618	0.63	-0.1
1,783,457	+		MIT1002_01618	0.66	+0.2
1,783,465	+		MIT1002_01618	0.66	+0.3
1,783,465	+		MIT1002_01618	0.66	-0.4
1,783,473	-		MIT1002_01618	0.67	-0.6
1,783,473	-		MIT1002_01618	0.67	-0.8
1,783,632	-		MIT1002_01618	0.75	-0.2
1,783,710	+		MIT1002_01618	0.79	+1.8
1,783,710	+		MIT1002_01618	0.79	+0.1
1,783,718	-		MIT1002_01618	0.79	-0.0
1,783,718	-		MIT1002_01618	0.79	-2.3
1,783,737	+		MIT1002_01618	0.80	-1.2
1,783,737	+		MIT1002_01618	0.80	+0.1
1,783,745	-		MIT1002_01618	0.81	+1.0
1,783,745	-		MIT1002_01618	0.81	+0.5
1,783,745	-		MIT1002_01618	0.81	+0.2
1,783,757	-		MIT1002_01618	0.81	+0.6
1,783,782	-		MIT1002_01618	0.83	-1.3
1,783,871	+		MIT1002_01618	0.87	-0.2
1,783,881	-		MIT1002_01618	0.88	-1.5
1,783,881	-		MIT1002_01618	0.88	-1.3
1,783,949	-				+0.4
1,784,141	-				+1.6
1,784,158	-				+0.0
1,784,169	-				+0.4
1,784,169	-				+0.9
1,784,196	+		MIT1002_01619	0.12	-0.5
1,784,196	-		MIT1002_01619	0.12	+0.5
1,784,313	-		MIT1002_01619	0.30	+0.7
1,784,318	-		MIT1002_01619	0.31	+1.7
1,784,329	-		MIT1002_01619	0.33	-0.7
1,784,334	+		MIT1002_01619	0.33	+1.3
1,784,337	-		MIT1002_01619	0.34	-0.2
1,784,397	-		MIT1002_01619	0.43	-0.2
1,784,419	+		MIT1002_01619	0.47	-0.4
1,784,430	+		MIT1002_01619	0.48	-0.4
1,784,459	+		MIT1002_01619	0.53	+0.2
1,784,465	-		MIT1002_01619	0.54	-0.9
1,784,467	-		MIT1002_01619	0.54	+0.8
1,784,467	-		MIT1002_01619	0.54	+0.1
1,784,467	-		MIT1002_01619	0.54	+0.4
1,784,484	-		MIT1002_01619	0.57	+1.0
1,784,500	+		MIT1002_01619	0.59	+0.8
1,784,500	+		MIT1002_01619	0.59	-0.1
1,784,500	+		MIT1002_01619	0.59	+0.7
1,784,500	+		MIT1002_01619	0.59	-0.2
1,784,500	+		MIT1002_01619	0.59	+2.3
1,784,500	+		MIT1002_01619	0.59	-0.5
1,784,500	+		MIT1002_01619	0.59	-0.4
1,784,508	-		MIT1002_01619	0.60	+0.7
1,784,508	-		MIT1002_01619	0.60	+1.2
1,784,508	-		MIT1002_01619	0.60	-0.7
1,784,508	-		MIT1002_01619	0.60	+2.1
1,784,519	-		MIT1002_01619	0.62	+0.0
1,784,526	-		MIT1002_01619	0.63	-0.4
1,784,666	-		MIT1002_01619	0.85	+0.3
1,784,849	+				+0.4
1,784,863	+				-0.3
1,784,914	-				-0.3
1,784,914	-				-0.6
1,784,992	+				+1.9
1,784,992	+				-0.9
1,785,038	+				+1.4
1,785,108	-				+0.4
1,785,176	+				+0.4
1,785,268	-				+0.3
1,785,309	+		MIT1002_01620	0.11	+0.1
1,785,331	+		MIT1002_01620	0.13	-0.3
1,785,348	+		MIT1002_01620	0.15	-0.8
1,785,393	-		MIT1002_01620	0.19	-0.1
1,785,394	+		MIT1002_01620	0.19	+0.1
1,785,420	-		MIT1002_01620	0.21	+0.2
1,785,508	-		MIT1002_01620	0.29	-0.7
1,785,516	-		MIT1002_01620	0.29	-0.6
1,785,532	+		MIT1002_01620	0.31	-2.0
1,785,540	-		MIT1002_01620	0.31	-0.1
1,785,540	-		MIT1002_01620	0.31	+0.9
1,785,540	-		MIT1002_01620	0.31	+1.4
1,785,568	+		MIT1002_01620	0.34	-0.4
1,785,626	-		MIT1002_01620	0.39	+0.8
1,785,697	+		MIT1002_01620	0.45	+1.6
1,785,705	-		MIT1002_01620	0.46	+0.3
1,785,705	-		MIT1002_01620	0.46	-0.1
1,785,734	+		MIT1002_01620	0.48	+0.6
1,785,742	+		MIT1002_01620	0.49	+0.7
1,785,744	+		MIT1002_01620	0.49	-0.3
1,785,754	-		MIT1002_01620	0.50	+2.7
1,785,754	-		MIT1002_01620	0.50	-0.0
1,785,754	-		MIT1002_01620	0.50	-0.1
1,785,755	-		MIT1002_01620	0.50	+0.6