Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01551

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01550 and MIT1002_01551 are separated by 175 nucleotidesMIT1002_01551 and MIT1002_01552 are separated by 251 nucleotidesMIT1002_01552 and MIT1002_01553 are separated by 37 nucleotides MIT1002_01550: MIT1002_01550 - Transposase, at 1,702,885 to 1,704,423 _01550 MIT1002_01551: MIT1002_01551 - hypothetical protein, at 1,704,599 to 1,704,751 _01551 MIT1002_01552: MIT1002_01552 - putative enzyme related to lactoylglutathione lyase, at 1,705,003 to 1,705,269 _01552 MIT1002_01553: MIT1002_01553 - 4-hydroxyphenylpyruvate dioxygenase, at 1,705,307 to 1,706,380 _01553 Position (kb) 1704 1705Strain fitness (log2 ratio) -3 -2 -1 0 1at 1704.979 kb on - strandat 1705.043 kb on + strand, within MIT1002_01552at 1705.056 kb on - strand, within MIT1002_01552at 1705.089 kb on + strand, within MIT1002_01552at 1705.276 kb on - strandat 1705.292 kb on - strandat 1705.295 kb on - strandat 1705.376 kb on - strandat 1705.488 kb on - strand, within MIT1002_01553at 1705.674 kb on + strand, within MIT1002_01553at 1705.686 kb on + strand, within MIT1002_01553

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
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1,704,979 - +0.2
1,705,043 + MIT1002_01552 0.15 -0.6
1,705,056 - MIT1002_01552 0.20 -0.1
1,705,089 + MIT1002_01552 0.32 -1.3
1,705,276 - -0.4
1,705,292 - +0.0
1,705,295 - +0.2
1,705,376 - -2.9
1,705,488 - MIT1002_01553 0.17 -1.7
1,705,674 + MIT1002_01553 0.34 -2.7
1,705,686 + MIT1002_01553 0.35 +0.1

Or see this region's nucleotide sequence