Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01350

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
1,491,691	+		MIT1002_01349	0.18	-0.4
1,491,742	-		MIT1002_01349	0.22	+1.7
1,491,779	+		MIT1002_01349	0.25	-0.1
1,491,786	-		MIT1002_01349	0.26	+0.1
1,491,789	+		MIT1002_01349	0.26	-0.6
1,491,810	+		MIT1002_01349	0.28	+2.1
1,491,810	+		MIT1002_01349	0.28	+0.5
1,491,810	+		MIT1002_01349	0.28	+1.8
1,491,818	-		MIT1002_01349	0.29	-0.6
1,491,832	+		MIT1002_01349	0.30	+0.6
1,491,847	+		MIT1002_01349	0.31	-0.3
1,491,855	-		MIT1002_01349	0.32	+2.1
1,491,862	+		MIT1002_01349	0.32	+2.0
1,491,870	-		MIT1002_01349	0.33	-0.8
1,491,876	+		MIT1002_01349	0.34	+1.3
1,491,884	-		MIT1002_01349	0.34	+0.3
1,491,891	+		MIT1002_01349	0.35	-1.7
1,491,901	-		MIT1002_01349	0.36	+0.9
1,492,036	-		MIT1002_01349	0.47	-0.1
1,492,046	-		MIT1002_01349	0.48	-0.3
1,492,086	-		MIT1002_01349	0.51	-0.6
1,492,167	-		MIT1002_01349	0.58	-1.9
1,492,167	-		MIT1002_01349	0.58	-1.2
1,492,167	-		MIT1002_01349	0.58	+0.8
1,492,167	-		MIT1002_01349	0.58	-0.9
1,492,167	-		MIT1002_01349	0.58	-2.5
1,492,276	-		MIT1002_01349	0.67	-0.0
1,492,398	+		MIT1002_01349	0.77	-0.3
1,492,454	-		MIT1002_01349	0.82	-2.0
1,492,464	+		MIT1002_01349	0.83	-0.1
1,492,490	+		MIT1002_01349	0.85	-2.7
1,492,498	-		MIT1002_01349	0.86	+0.6
1,492,506	-		MIT1002_01349	0.86	-0.2
1,492,543	-		MIT1002_01349	0.90	+0.2
1,492,582	+				+0.8
1,492,582	+				+0.3
1,492,633	+				-0.8
1,492,638	+				+1.3
1,492,641	-				+0.5
1,492,641	-				+1.3
1,492,643	+				+0.8
1,492,720	-				-1.4
1,492,737	-				-0.7
1,492,789	+				-2.2
1,493,065	+		MIT1002_01350	0.16	+0.2
1,493,065	+		MIT1002_01350	0.16	-0.0
1,493,065	+		MIT1002_01350	0.16	+1.2
1,493,183	+		MIT1002_01350	0.21	-0.4
1,493,191	-		MIT1002_01350	0.21	-2.4
1,493,194	+		MIT1002_01350	0.21	+0.1
1,493,202	+		MIT1002_01350	0.21	+2.7
1,493,202	+		MIT1002_01350	0.21	+2.8
1,493,209	-		MIT1002_01350	0.22	-0.1
1,493,210	-		MIT1002_01350	0.22	-0.1
1,493,210	-		MIT1002_01350	0.22	-1.9
1,493,239	+		MIT1002_01350	0.23	-0.0
1,493,319	+		MIT1002_01350	0.26	+1.0
1,493,319	+		MIT1002_01350	0.26	-1.0
1,493,319	+		MIT1002_01350	0.26	+0.2
1,493,327	-		MIT1002_01350	0.26	-0.9
1,493,489	+		MIT1002_01350	0.33	-0.4
1,493,498	-		MIT1002_01350	0.33	-0.9
1,493,543	+		MIT1002_01350	0.35	+1.4
1,493,576	+		MIT1002_01350	0.37	+1.6
1,493,685	-		MIT1002_01350	0.41	-2.2
1,493,827	+		MIT1002_01350	0.47	+0.7
1,493,835	-		MIT1002_01350	0.47	+0.1
1,493,835	-		MIT1002_01350	0.47	-0.7
1,493,835	-		MIT1002_01350	0.47	+0.2
1,493,835	-		MIT1002_01350	0.47	+2.1
1,493,837	+		MIT1002_01350	0.47	-1.3
1,493,837	+		MIT1002_01350	0.47	+1.0
1,494,131	-		MIT1002_01350	0.59	+1.7
1,494,152	-		MIT1002_01350	0.60	+0.5
1,494,152	-		MIT1002_01350	0.60	+0.1
1,494,165	-		MIT1002_01350	0.60	-0.8
1,494,175	-		MIT1002_01350	0.61	-0.6
1,494,221	-		MIT1002_01350	0.63	-1.3
1,494,257	+		MIT1002_01350	0.64	-1.7
1,494,381	+		MIT1002_01350	0.69	-2.0
1,494,469	-		MIT1002_01350	0.73	+0.7
1,494,469	-		MIT1002_01350	0.73	-0.4
1,494,520	+		MIT1002_01350	0.75	+0.1
1,494,520	+		MIT1002_01350	0.75	+0.6
1,494,535	-		MIT1002_01350	0.75	-0.1
1,494,535	-		MIT1002_01350	0.75	+0.1
1,494,535	-		MIT1002_01350	0.75	-0.1
1,494,586	+		MIT1002_01350	0.77	-0.5
1,494,586	+		MIT1002_01350	0.77	+0.2
1,494,586	+		MIT1002_01350	0.77	-0.0
1,494,638	-		MIT1002_01350	0.79	-2.9
1,494,638	-		MIT1002_01350	0.79	+0.1
1,494,671	+		MIT1002_01350	0.81	-1.8
1,494,679	-		MIT1002_01350	0.81	-1.9
1,494,686	+		MIT1002_01350	0.81	+0.1
1,494,708	-		MIT1002_01350	0.82	+0.3
1,494,710	+		MIT1002_01350	0.82	-1.5
1,494,710	+		MIT1002_01350	0.82	-1.6
1,494,710	+		MIT1002_01350	0.82	-0.4
1,494,718	-		MIT1002_01350	0.83	+0.5
1,494,718	-		MIT1002_01350	0.83	+1.0
1,494,718	-		MIT1002_01350	0.83	+0.6
1,494,769	+		MIT1002_01350	0.85	+1.6
1,494,775	-		MIT1002_01350	0.85	+0.1
1,494,801	-		MIT1002_01350	0.86	+1.1
1,494,803	+		MIT1002_01350	0.86	+0.9
1,494,816	+		MIT1002_01350	0.87	-2.3
1,494,822	-		MIT1002_01350	0.87	+0.8
1,494,822	-		MIT1002_01350	0.87	+0.3
1,494,822	-		MIT1002_01350	0.87	-0.4
1,494,891	+		MIT1002_01350	0.90	-1.7
1,495,060	+				+2.4
1,495,115	-				-0.7
1,495,127	+				-0.9
1,495,150	+				+1.1
1,495,160	+				+0.3
1,495,268	+				+0.4
1,495,442	+		MIT1002_01351	0.33	-2.1
1,495,450	-		MIT1002_01351	0.36	-1.1
1,495,457	+		MIT1002_01351	0.38	-0.4
1,495,542	+		MIT1002_01351	0.61	-0.3
1,495,574	+		MIT1002_01351	0.70	+1.0
1,495,652	-				+0.0
1,495,662	+				-1.7
1,495,829	-				-2.2
1,495,829	-				-2.6
1,495,852	+				-1.5
1,495,892	+				-3.2
1,495,930	+		MIT1002_01352	0.12	-3.0
1,495,930	+		MIT1002_01352	0.12	-2.1
1,495,930	+		MIT1002_01352	0.12	-0.3
1,495,930	+		MIT1002_01352	0.12	-2.4
1,495,931	-		MIT1002_01352	0.12	-3.7
1,495,931	-		MIT1002_01352	0.12	-4.6
1,495,938	-		MIT1002_01352	0.12	-1.9
1,495,938	-		MIT1002_01352	0.12	-1.7
1,495,938	-		MIT1002_01352	0.12	-3.1
1,495,938	-		MIT1002_01352	0.12	+0.1
1,495,938	-		MIT1002_01352	0.12	-3.0
1,495,938	-		MIT1002_01352	0.12	-0.9
1,495,938	-		MIT1002_01352	0.12	-0.7
1,495,938	-		MIT1002_01352	0.12	-0.7
1,495,938	-		MIT1002_01352	0.12	-1.9
1,495,940	+		MIT1002_01352	0.12	-2.8
1,495,960	+		MIT1002_01352	0.14	-1.1
1,496,003	+		MIT1002_01352	0.18	-2.1
1,496,087	+		MIT1002_01352	0.26	-2.4
1,496,087	+		MIT1002_01352	0.26	-2.6
1,496,117	+		MIT1002_01352	0.28	-4.4
1,496,122	-		MIT1002_01352	0.29	-2.2
1,496,145	+		MIT1002_01352	0.31	-2.3