Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00897

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00896 and MIT1002_00897 are separated by 217 nucleotidesMIT1002_00897 and MIT1002_00898 are separated by 4 nucleotides MIT1002_00896: MIT1002_00896 - hypothetical protein, at 986,940 to 988,232 _00896 MIT1002_00897: MIT1002_00897 - Nuclease SbcCD subunit D, at 988,450 to 990,045 _00897 MIT1002_00898: MIT1002_00898 - Nuclease SbcCD subunit C, at 990,050 to 993,787 _00898 Position (kb) 988 989 990 991Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 987.474 kb on + strand, within MIT1002_00896at 987.482 kb on + strand, within MIT1002_00896at 987.572 kb on - strand, within MIT1002_00896at 987.620 kb on - strand, within MIT1002_00896at 987.625 kb on + strand, within MIT1002_00896at 987.625 kb on + strand, within MIT1002_00896at 987.667 kb on - strand, within MIT1002_00896at 987.729 kb on - strand, within MIT1002_00896at 987.761 kb on - strand, within MIT1002_00896at 987.823 kb on - strand, within MIT1002_00896at 987.892 kb on + strand, within MIT1002_00896at 987.913 kb on - strand, within MIT1002_00896at 987.916 kb on - strand, within MIT1002_00896at 987.952 kb on + strand, within MIT1002_00896at 987.963 kb on + strand, within MIT1002_00896at 987.975 kb on + strand, within MIT1002_00896at 988.011 kb on + strand, within MIT1002_00896at 988.063 kb on + strand, within MIT1002_00896at 988.073 kb on + strand, within MIT1002_00896at 988.098 kb on - strand, within MIT1002_00896at 988.144 kb on - strandat 988.234 kb on - strandat 988.261 kb on - strandat 988.414 kb on + strandat 988.422 kb on + strandat 988.424 kb on + strandat 988.430 kb on - strandat 988.675 kb on - strand, within MIT1002_00897at 988.702 kb on + strand, within MIT1002_00897at 988.710 kb on - strand, within MIT1002_00897at 988.713 kb on + strand, within MIT1002_00897at 988.720 kb on + strand, within MIT1002_00897at 988.724 kb on - strand, within MIT1002_00897at 988.729 kb on - strand, within MIT1002_00897at 988.759 kb on + strand, within MIT1002_00897at 988.824 kb on - strand, within MIT1002_00897at 988.832 kb on + strand, within MIT1002_00897at 988.864 kb on + strand, within MIT1002_00897at 988.869 kb on + strand, within MIT1002_00897at 988.869 kb on + strand, within MIT1002_00897at 988.869 kb on + strand, within MIT1002_00897at 988.869 kb on + strand, within MIT1002_00897at 988.869 kb on + strand, within MIT1002_00897at 988.872 kb on - strand, within MIT1002_00897at 988.874 kb on + strand, within MIT1002_00897at 988.874 kb on + strand, within MIT1002_00897at 988.874 kb on + strand, within MIT1002_00897at 988.874 kb on + strand, within MIT1002_00897at 988.876 kb on + strand, within MIT1002_00897at 988.877 kb on - strand, within MIT1002_00897at 988.877 kb on - strand, within MIT1002_00897at 988.877 kb on - strand, within MIT1002_00897at 988.881 kb on + strand, within MIT1002_00897at 988.882 kb on - strand, within MIT1002_00897at 988.888 kb on + strand, within MIT1002_00897at 988.896 kb on - strand, within MIT1002_00897at 988.915 kb on + strand, within MIT1002_00897at 988.933 kb on + strand, within MIT1002_00897at 988.968 kb on - strand, within MIT1002_00897at 988.983 kb on + strand, within MIT1002_00897at 988.991 kb on - strand, within MIT1002_00897at 988.991 kb on - strand, within MIT1002_00897at 989.094 kb on - strand, within MIT1002_00897at 989.104 kb on + strand, within MIT1002_00897at 989.123 kb on + strand, within MIT1002_00897at 989.163 kb on - strand, within MIT1002_00897at 989.185 kb on - strand, within MIT1002_00897at 989.264 kb on + strand, within MIT1002_00897at 989.272 kb on - strand, within MIT1002_00897at 989.344 kb on + strand, within MIT1002_00897at 989.344 kb on - strand, within MIT1002_00897at 989.402 kb on + strand, within MIT1002_00897at 989.492 kb on - strand, within MIT1002_00897at 989.493 kb on - strand, within MIT1002_00897at 989.523 kb on + strand, within MIT1002_00897at 989.576 kb on - strand, within MIT1002_00897at 989.590 kb on - strand, within MIT1002_00897at 989.590 kb on - strand, within MIT1002_00897at 989.601 kb on + strand, within MIT1002_00897at 989.607 kb on + strand, within MIT1002_00897at 989.628 kb on + strand, within MIT1002_00897at 989.639 kb on + strand, within MIT1002_00897at 989.719 kb on + strand, within MIT1002_00897at 989.727 kb on - strand, within MIT1002_00897at 989.727 kb on - strand, within MIT1002_00897at 989.838 kb on + strand, within MIT1002_00897at 989.879 kb on + strand, within MIT1002_00897at 989.880 kb on + strand, within MIT1002_00897at 989.887 kb on - strandat 989.946 kb on + strandat 989.976 kb on - strandat 990.030 kb on + strandat 990.100 kb on + strandat 990.195 kb on - strandat 990.295 kb on + strandat 990.352 kb on - strandat 990.381 kb on + strandat 990.426 kb on - strand, within MIT1002_00898at 990.428 kb on + strand, within MIT1002_00898at 990.496 kb on + strand, within MIT1002_00898at 990.505 kb on - strand, within MIT1002_00898at 990.505 kb on - strand, within MIT1002_00898at 990.680 kb on + strand, within MIT1002_00898at 990.682 kb on - strand, within MIT1002_00898at 990.683 kb on - strand, within MIT1002_00898at 990.709 kb on + strand, within MIT1002_00898at 990.709 kb on + strand, within MIT1002_00898at 990.717 kb on - strand, within MIT1002_00898at 990.717 kb on - strand, within MIT1002_00898at 990.717 kb on - strand, within MIT1002_00898at 990.717 kb on - strand, within MIT1002_00898at 990.751 kb on - strand, within MIT1002_00898at 990.842 kb on + strand, within MIT1002_00898at 990.842 kb on + strand, within MIT1002_00898at 990.850 kb on - strand, within MIT1002_00898at 991.036 kb on + strand, within MIT1002_00898at 991.041 kb on + strand, within MIT1002_00898

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
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987,474 + MIT1002_00896 0.41 -2.5
987,482 + MIT1002_00896 0.42 +0.2
987,572 - MIT1002_00896 0.49 -0.7
987,620 - MIT1002_00896 0.53 +0.1
987,625 + MIT1002_00896 0.53 +0.5
987,625 + MIT1002_00896 0.53 +0.2
987,667 - MIT1002_00896 0.56 +1.8
987,729 - MIT1002_00896 0.61 -0.2
987,761 - MIT1002_00896 0.63 +0.0
987,823 - MIT1002_00896 0.68 +0.4
987,892 + MIT1002_00896 0.74 +1.6
987,913 - MIT1002_00896 0.75 -1.8
987,916 - MIT1002_00896 0.75 +0.8
987,952 + MIT1002_00896 0.78 -0.6
987,963 + MIT1002_00896 0.79 +1.1
987,975 + MIT1002_00896 0.80 -0.6
988,011 + MIT1002_00896 0.83 +0.1
988,063 + MIT1002_00896 0.87 -0.6
988,073 + MIT1002_00896 0.88 +0.7
988,098 - MIT1002_00896 0.90 -0.7
988,144 - -1.0
988,234 - +1.0
988,261 - -3.3
988,414 + -1.0
988,422 + -3.1
988,424 + -0.2
988,430 - -1.6
988,675 - MIT1002_00897 0.14 +0.7
988,702 + MIT1002_00897 0.16 +0.7
988,710 - MIT1002_00897 0.16 -0.7
988,713 + MIT1002_00897 0.16 +0.0
988,720 + MIT1002_00897 0.17 +0.0
988,724 - MIT1002_00897 0.17 -0.8
988,729 - MIT1002_00897 0.17 -0.7
988,759 + MIT1002_00897 0.19 +0.5
988,824 - MIT1002_00897 0.23 -0.5
988,832 + MIT1002_00897 0.24 -0.1
988,864 + MIT1002_00897 0.26 -2.3
988,869 + MIT1002_00897 0.26 +0.3
988,869 + MIT1002_00897 0.26 +1.1
988,869 + MIT1002_00897 0.26 +1.8
988,869 + MIT1002_00897 0.26 -0.3
988,869 + MIT1002_00897 0.26 +1.3
988,872 - MIT1002_00897 0.26 +1.2
988,874 + MIT1002_00897 0.27 +1.6
988,874 + MIT1002_00897 0.27 -0.7
988,874 + MIT1002_00897 0.27 -1.0
988,874 + MIT1002_00897 0.27 -2.1
988,876 + MIT1002_00897 0.27 +0.9
988,877 - MIT1002_00897 0.27 -0.7
988,877 - MIT1002_00897 0.27 +0.7
988,877 - MIT1002_00897 0.27 +1.2
988,881 + MIT1002_00897 0.27 -0.2
988,882 - MIT1002_00897 0.27 -0.7
988,888 + MIT1002_00897 0.27 +0.6
988,896 - MIT1002_00897 0.28 +1.5
988,915 + MIT1002_00897 0.29 -0.6
988,933 + MIT1002_00897 0.30 +0.9
988,968 - MIT1002_00897 0.32 +1.9
988,983 + MIT1002_00897 0.33 +0.5
988,991 - MIT1002_00897 0.34 +0.0
988,991 - MIT1002_00897 0.34 +1.6
989,094 - MIT1002_00897 0.40 +0.4
989,104 + MIT1002_00897 0.41 +0.5
989,123 + MIT1002_00897 0.42 +0.3
989,163 - MIT1002_00897 0.45 +0.4
989,185 - MIT1002_00897 0.46 +0.9
989,264 + MIT1002_00897 0.51 +0.1
989,272 - MIT1002_00897 0.52 +0.7
989,344 + MIT1002_00897 0.56 -1.5
989,344 - MIT1002_00897 0.56 -0.1
989,402 + MIT1002_00897 0.60 -1.3
989,492 - MIT1002_00897 0.65 -0.8
989,493 - MIT1002_00897 0.65 -0.7
989,523 + MIT1002_00897 0.67 +0.0
989,576 - MIT1002_00897 0.71 -0.4
989,590 - MIT1002_00897 0.71 -0.7
989,590 - MIT1002_00897 0.71 -1.2
989,601 + MIT1002_00897 0.72 +0.3
989,607 + MIT1002_00897 0.72 -0.7
989,628 + MIT1002_00897 0.74 +0.3
989,639 + MIT1002_00897 0.74 +0.6
989,719 + MIT1002_00897 0.80 +0.4
989,727 - MIT1002_00897 0.80 -1.6
989,727 - MIT1002_00897 0.80 +2.5
989,838 + MIT1002_00897 0.87 -1.0
989,879 + MIT1002_00897 0.90 +0.3
989,880 + MIT1002_00897 0.90 +0.7
989,887 - -1.1
989,946 + +0.4
989,976 - -1.3
990,030 + -1.2
990,100 + -0.2
990,195 - +1.6
990,295 + +1.1
990,352 - +0.7
990,381 + +0.4
990,426 - MIT1002_00898 0.10 +0.1
990,428 + MIT1002_00898 0.10 -2.5
990,496 + MIT1002_00898 0.12 +1.5
990,505 - MIT1002_00898 0.12 -0.1
990,505 - MIT1002_00898 0.12 -0.7
990,680 + MIT1002_00898 0.17 +0.5
990,682 - MIT1002_00898 0.17 -0.0
990,683 - MIT1002_00898 0.17 -0.7
990,709 + MIT1002_00898 0.18 -0.8
990,709 + MIT1002_00898 0.18 -1.1
990,717 - MIT1002_00898 0.18 -0.2
990,717 - MIT1002_00898 0.18 -2.0
990,717 - MIT1002_00898 0.18 -0.2
990,717 - MIT1002_00898 0.18 -2.0
990,751 - MIT1002_00898 0.19 +2.2
990,842 + MIT1002_00898 0.21 -1.3
990,842 + MIT1002_00898 0.21 +1.6
990,850 - MIT1002_00898 0.21 -0.5
991,036 + MIT1002_00898 0.26 +1.2
991,041 + MIT1002_00898 0.27 +0.3

Or see this region's nucleotide sequence