Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00824 and MIT1002_00825 are separated by 84 nucleotides MIT1002_00825 and MIT1002_00826 are separated by 13 nucleotides MIT1002_00826 and MIT1002_00827 are separated by 30 nucleotides MIT1002_00827 and MIT1002_00828 are separated by 73 nucleotides MIT1002_00828 and MIT1002_00829 are separated by 2 nucleotides
MIT1002_00824: MIT1002_00824 - glmZ(sRNA)-inactivating NTPase, at 908,060 to 908,905
_00824
MIT1002_00825: MIT1002_00825 - Nitrogen regulatory protein, at 908,990 to 909,433
_00825
MIT1002_00826: MIT1002_00826 - Ribosome hibernation promoting factor, at 909,447 to 909,734
_00826
MIT1002_00827: MIT1002_00827 - RNA polymerase sigma-54 factor 2, at 909,765 to 911,246
_00827
MIT1002_00828: MIT1002_00828 - Lipopolysaccharide export system ATP-binding protein LptB, at 911,320 to 912,045
_00828
MIT1002_00829: MIT1002_00829 - Lipopolysaccharide export system protein LptA precursor, at 912,048 to 912,602
_00829
Position (kb) 909
910
911
912 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 908.775 kb on + strand, within MIT1002_00824 at 908.776 kb on + strand, within MIT1002_00824 at 908.776 kb on - strand, within MIT1002_00824 at 908.907 kb on - strand at 908.941 kb on + strand at 908.979 kb on - strand at 909.099 kb on + strand, within MIT1002_00825 at 909.104 kb on + strand, within MIT1002_00825 at 909.104 kb on + strand, within MIT1002_00825 at 909.188 kb on + strand, within MIT1002_00825 at 909.196 kb on - strand, within MIT1002_00825 at 909.196 kb on - strand, within MIT1002_00825 at 909.196 kb on - strand, within MIT1002_00825 at 909.262 kb on - strand, within MIT1002_00825 at 909.277 kb on - strand, within MIT1002_00825 at 909.311 kb on - strand, within MIT1002_00825 at 909.411 kb on - strand at 909.417 kb on - strand at 909.515 kb on - strand, within MIT1002_00826 at 909.528 kb on - strand, within MIT1002_00826 at 909.562 kb on - strand, within MIT1002_00826 at 909.572 kb on - strand, within MIT1002_00826 at 909.708 kb on + strand at 909.842 kb on + strand at 909.961 kb on + strand, within MIT1002_00827 at 909.961 kb on + strand, within MIT1002_00827 at 910.608 kb on + strand, within MIT1002_00827 at 910.771 kb on - strand, within MIT1002_00827 at 910.920 kb on - strand, within MIT1002_00827 at 910.952 kb on + strand, within MIT1002_00827 at 911.122 kb on - strand at 911.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5 remove 908,775 + MIT1002_00824 0.85 -1.6 908,776 + MIT1002_00824 0.85 -0.6 908,776 - MIT1002_00824 0.85 -0.8 908,907 - +1.2 908,941 + +0.3 908,979 - -0.5 909,099 + MIT1002_00825 0.25 -3.3 909,104 + MIT1002_00825 0.26 -0.4 909,104 + MIT1002_00825 0.26 -2.8 909,188 + MIT1002_00825 0.45 -0.4 909,196 - MIT1002_00825 0.46 -0.9 909,196 - MIT1002_00825 0.46 +0.6 909,196 - MIT1002_00825 0.46 -2.9 909,262 - MIT1002_00825 0.61 -2.5 909,277 - MIT1002_00825 0.65 -2.4 909,311 - MIT1002_00825 0.72 -3.9 909,411 - -1.4 909,417 - -1.4 909,515 - MIT1002_00826 0.24 -4.8 909,528 - MIT1002_00826 0.28 -2.4 909,562 - MIT1002_00826 0.40 -3.2 909,572 - MIT1002_00826 0.43 -2.1 909,708 + -3.6 909,842 + -0.4 909,961 + MIT1002_00827 0.13 +0.3 909,961 + MIT1002_00827 0.13 -1.7 910,608 + MIT1002_00827 0.57 -0.7 910,771 - MIT1002_00827 0.68 -1.3 910,920 - MIT1002_00827 0.78 -1.6 910,952 + MIT1002_00827 0.80 -4.2 911,122 - -0.2 911,122 - -1.4
Or see this region's nucleotide sequence