Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00817 and MIT1002_00818 overlap by 4 nucleotides MIT1002_00818 and MIT1002_00819 are separated by 185 nucleotides MIT1002_00819 and MIT1002_00820 are separated by 12 nucleotides
MIT1002_00817: MIT1002_00817 - Stringent starvation protein A, at 902,264 to 902,896
_00817
MIT1002_00818: MIT1002_00818 - Stringent starvation protein B, at 902,893 to 903,366
_00818
MIT1002_00819: MIT1002_00819 - Spondin_N, at 903,552 to 904,400
_00819
MIT1002_00820: MIT1002_00820 - Spondin_N, at 904,413 to 905,228
_00820
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 902.968 kb on - strand, within MIT1002_00818 at 903.146 kb on + strand, within MIT1002_00818 at 903.193 kb on + strand, within MIT1002_00818 at 903.262 kb on + strand, within MIT1002_00818 at 903.320 kb on - strand at 903.325 kb on - strand at 903.336 kb on + strand at 903.344 kb on - strand at 903.427 kb on - strand at 903.480 kb on - strand at 903.509 kb on - strand at 903.520 kb on - strand at 903.520 kb on - strand at 903.535 kb on + strand at 903.543 kb on - strand at 903.612 kb on - strand at 903.617 kb on - strand at 903.627 kb on - strand at 903.629 kb on + strand at 903.671 kb on - strand, within MIT1002_00819 at 903.776 kb on + strand, within MIT1002_00819 at 903.792 kb on - strand, within MIT1002_00819 at 903.805 kb on - strand, within MIT1002_00819 at 903.892 kb on + strand, within MIT1002_00819 at 903.927 kb on + strand, within MIT1002_00819 at 903.932 kb on + strand, within MIT1002_00819 at 903.963 kb on + strand, within MIT1002_00819 at 903.964 kb on - strand, within MIT1002_00819 at 904.016 kb on - strand, within MIT1002_00819 at 904.035 kb on + strand, within MIT1002_00819 at 904.043 kb on - strand, within MIT1002_00819 at 904.054 kb on + strand, within MIT1002_00819 at 904.138 kb on - strand, within MIT1002_00819 at 904.148 kb on - strand, within MIT1002_00819 at 904.167 kb on - strand, within MIT1002_00819 at 904.168 kb on - strand, within MIT1002_00819 at 904.175 kb on - strand, within MIT1002_00819 at 904.186 kb on - strand, within MIT1002_00819 at 904.209 kb on - strand, within MIT1002_00819 at 904.247 kb on + strand, within MIT1002_00819 at 904.256 kb on - strand, within MIT1002_00819 at 904.256 kb on - strand, within MIT1002_00819 at 904.256 kb on - strand, within MIT1002_00819 at 904.279 kb on + strand, within MIT1002_00819 at 904.290 kb on + strand, within MIT1002_00819 at 904.298 kb on - strand, within MIT1002_00819 at 904.343 kb on + strand at 904.450 kb on - strand at 904.455 kb on - strand at 904.464 kb on + strand at 904.466 kb on + strand at 904.474 kb on - strand at 904.474 kb on - strand at 904.476 kb on + strand at 904.476 kb on + strand at 904.535 kb on + strand, within MIT1002_00820 at 904.535 kb on + strand, within MIT1002_00820 at 904.535 kb on + strand, within MIT1002_00820 at 904.535 kb on + strand, within MIT1002_00820 at 904.538 kb on - strand, within MIT1002_00820 at 904.628 kb on - strand, within MIT1002_00820 at 904.656 kb on + strand, within MIT1002_00820 at 904.668 kb on - strand, within MIT1002_00820 at 904.687 kb on + strand, within MIT1002_00820 at 904.697 kb on + strand, within MIT1002_00820 at 904.705 kb on - strand, within MIT1002_00820 at 904.713 kb on + strand, within MIT1002_00820 at 904.721 kb on - strand, within MIT1002_00820 at 904.757 kb on + strand, within MIT1002_00820 at 904.773 kb on - strand, within MIT1002_00820 at 904.790 kb on + strand, within MIT1002_00820 at 904.800 kb on + strand, within MIT1002_00820 at 904.800 kb on + strand, within MIT1002_00820 at 904.853 kb on + strand, within MIT1002_00820 at 904.870 kb on + strand, within MIT1002_00820 at 904.892 kb on - strand, within MIT1002_00820 at 904.892 kb on - strand, within MIT1002_00820 at 904.960 kb on - strand, within MIT1002_00820 at 904.977 kb on + strand, within MIT1002_00820 at 904.986 kb on + strand, within MIT1002_00820 at 905.073 kb on - strand, within MIT1002_00820 at 905.111 kb on + strand, within MIT1002_00820 at 905.113 kb on + strand, within MIT1002_00820 at 905.119 kb on - strand, within MIT1002_00820 at 905.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5 remove 902,968 - MIT1002_00818 0.16 -0.2 903,146 + MIT1002_00818 0.53 -1.9 903,193 + MIT1002_00818 0.63 -0.8 903,262 + MIT1002_00818 0.78 +1.6 903,320 - -2.8 903,325 - -2.0 903,336 + -0.4 903,344 - -1.4 903,427 - +0.3 903,480 - -2.0 903,509 - +0.8 903,520 - -1.1 903,520 - -0.4 903,535 + -0.7 903,543 - +1.2 903,612 - -1.5 903,617 - +0.1 903,627 - -1.1 903,629 + +0.4 903,671 - MIT1002_00819 0.14 +0.8 903,776 + MIT1002_00819 0.26 +1.2 903,792 - MIT1002_00819 0.28 -1.3 903,805 - MIT1002_00819 0.30 -0.8 903,892 + MIT1002_00819 0.40 -0.2 903,927 + MIT1002_00819 0.44 -0.5 903,932 + MIT1002_00819 0.45 +0.6 903,963 + MIT1002_00819 0.48 +1.3 903,964 - MIT1002_00819 0.49 -0.5 904,016 - MIT1002_00819 0.55 -1.9 904,035 + MIT1002_00819 0.57 -0.1 904,043 - MIT1002_00819 0.58 +0.0 904,054 + MIT1002_00819 0.59 -0.1 904,138 - MIT1002_00819 0.69 +1.1 904,148 - MIT1002_00819 0.70 -1.6 904,167 - MIT1002_00819 0.72 +1.1 904,168 - MIT1002_00819 0.73 +0.1 904,175 - MIT1002_00819 0.73 -0.1 904,186 - MIT1002_00819 0.75 +0.0 904,209 - MIT1002_00819 0.77 -0.6 904,247 + MIT1002_00819 0.82 +0.3 904,256 - MIT1002_00819 0.83 +1.7 904,256 - MIT1002_00819 0.83 +0.7 904,256 - MIT1002_00819 0.83 -1.1 904,279 + MIT1002_00819 0.86 +0.2 904,290 + MIT1002_00819 0.87 -0.2 904,298 - MIT1002_00819 0.88 +0.0 904,343 + +0.0 904,450 - +0.6 904,455 - -1.0 904,464 + -0.4 904,466 + -0.6 904,474 - +0.9 904,474 - -3.4 904,476 + -0.6 904,476 + -0.4 904,535 + MIT1002_00820 0.15 +1.7 904,535 + MIT1002_00820 0.15 +0.6 904,535 + MIT1002_00820 0.15 -1.2 904,535 + MIT1002_00820 0.15 +0.0 904,538 - MIT1002_00820 0.15 -0.3 904,628 - MIT1002_00820 0.26 -0.1 904,656 + MIT1002_00820 0.30 +1.4 904,668 - MIT1002_00820 0.31 -1.4 904,687 + MIT1002_00820 0.34 -0.4 904,697 + MIT1002_00820 0.35 +0.1 904,705 - MIT1002_00820 0.36 -1.6 904,713 + MIT1002_00820 0.37 -0.7 904,721 - MIT1002_00820 0.38 -0.7 904,757 + MIT1002_00820 0.42 +1.7 904,773 - MIT1002_00820 0.44 -1.4 904,790 + MIT1002_00820 0.46 +1.7 904,800 + MIT1002_00820 0.47 -0.8 904,800 + MIT1002_00820 0.47 +2.9 904,853 + MIT1002_00820 0.54 -0.4 904,870 + MIT1002_00820 0.56 +1.6 904,892 - MIT1002_00820 0.59 +0.7 904,892 - MIT1002_00820 0.59 -0.7 904,960 - MIT1002_00820 0.67 +1.7 904,977 + MIT1002_00820 0.69 +0.6 904,986 + MIT1002_00820 0.70 +0.1 905,073 - MIT1002_00820 0.81 -1.8 905,111 + MIT1002_00820 0.86 +1.0 905,113 + MIT1002_00820 0.86 +2.6 905,119 - MIT1002_00820 0.87 -1.2 905,203 + +0.3
Or see this region's nucleotide sequence