Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00687 and MIT1002_00688 are separated by 37 nucleotides MIT1002_00688 and MIT1002_00689 are separated by 49 nucleotides MIT1002_00689 and MIT1002_00690 are separated by 317 nucleotides MIT1002_00690 and MIT1002_00691 are separated by 5 nucleotides
MIT1002_00687: MIT1002_00687 - ribosomal-protein-S5-alanine N-acetyltransferase, at 752,091 to 752,609
_00687
MIT1002_00688: MIT1002_00688 - Peptidyl-prolyl cis-trans isomerase A precursor, at 752,647 to 753,255
_00688
MIT1002_00689: MIT1002_00689 - Ribosomal RNA large subunit methyltransferase G, at 753,305 to 754,537
_00689
MIT1002_00690: MIT1002_00690 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 754,855 to 755,496
_00690
MIT1002_00691: MIT1002_00691 - transcriptional regulator BolA, at 755,502 to 755,822
_00691
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 752.324 kb on + strand, within MIT1002_00687 at 752.340 kb on + strand, within MIT1002_00687 at 752.381 kb on - strand, within MIT1002_00687 at 752.393 kb on + strand, within MIT1002_00687 at 752.412 kb on + strand, within MIT1002_00687 at 752.419 kb on - strand, within MIT1002_00687 at 752.420 kb on - strand, within MIT1002_00687 at 752.430 kb on + strand, within MIT1002_00687 at 752.437 kb on + strand, within MIT1002_00687 at 752.439 kb on + strand, within MIT1002_00687 at 752.439 kb on + strand, within MIT1002_00687 at 752.439 kb on + strand, within MIT1002_00687 at 752.447 kb on - strand, within MIT1002_00687 at 752.447 kb on - strand, within MIT1002_00687 at 752.463 kb on - strand, within MIT1002_00687 at 752.489 kb on - strand, within MIT1002_00687 at 752.500 kb on + strand, within MIT1002_00687 at 752.510 kb on + strand, within MIT1002_00687 at 752.515 kb on + strand, within MIT1002_00687 at 752.527 kb on + strand, within MIT1002_00687 at 752.535 kb on - strand, within MIT1002_00687 at 752.544 kb on - strand, within MIT1002_00687 at 752.585 kb on + strand at 752.619 kb on + strand at 752.619 kb on - strand at 752.709 kb on + strand, within MIT1002_00688 at 752.797 kb on + strand, within MIT1002_00688 at 752.807 kb on + strand, within MIT1002_00688 at 752.815 kb on - strand, within MIT1002_00688 at 752.879 kb on + strand, within MIT1002_00688 at 752.889 kb on + strand, within MIT1002_00688 at 752.897 kb on - strand, within MIT1002_00688 at 752.968 kb on - strand, within MIT1002_00688 at 753.050 kb on + strand, within MIT1002_00688 at 753.076 kb on + strand, within MIT1002_00688 at 753.084 kb on + strand, within MIT1002_00688 at 753.097 kb on - strand, within MIT1002_00688 at 753.097 kb on - strand, within MIT1002_00688 at 753.143 kb on + strand, within MIT1002_00688 at 753.151 kb on - strand, within MIT1002_00688 at 753.165 kb on + strand, within MIT1002_00688 at 753.303 kb on + strand at 753.320 kb on + strand at 753.347 kb on + strand at 753.393 kb on + strand at 753.548 kb on - strand, within MIT1002_00689 at 753.634 kb on + strand, within MIT1002_00689 at 753.636 kb on - strand, within MIT1002_00689 at 753.656 kb on + strand, within MIT1002_00689 at 753.713 kb on + strand, within MIT1002_00689 at 753.713 kb on + strand, within MIT1002_00689 at 753.714 kb on - strand, within MIT1002_00689 at 753.734 kb on + strand, within MIT1002_00689 at 753.742 kb on - strand, within MIT1002_00689 at 753.751 kb on + strand, within MIT1002_00689 at 753.793 kb on + strand, within MIT1002_00689 at 753.801 kb on - strand, within MIT1002_00689 at 753.801 kb on - strand, within MIT1002_00689 at 753.872 kb on - strand, within MIT1002_00689 at 753.893 kb on - strand, within MIT1002_00689 at 753.893 kb on - strand, within MIT1002_00689 at 753.967 kb on - strand, within MIT1002_00689 at 754.096 kb on + strand, within MIT1002_00689 at 754.096 kb on + strand, within MIT1002_00689 at 754.104 kb on - strand, within MIT1002_00689 at 754.104 kb on - strand, within MIT1002_00689 at 754.113 kb on + strand, within MIT1002_00689 at 754.153 kb on + strand, within MIT1002_00689 at 754.172 kb on + strand, within MIT1002_00689 at 754.232 kb on + strand, within MIT1002_00689 at 754.246 kb on - strand, within MIT1002_00689 at 754.420 kb on - strand at 754.421 kb on - strand at 754.443 kb on + strand at 754.443 kb on + strand at 754.443 kb on + strand at 754.448 kb on + strand at 754.638 kb on + strand at 754.638 kb on + strand at 754.646 kb on - strand at 754.674 kb on + strand at 754.679 kb on + strand at 754.895 kb on - strand at 754.950 kb on + strand, within MIT1002_00690 at 754.950 kb on + strand, within MIT1002_00690 at 754.991 kb on - strand, within MIT1002_00690 at 755.001 kb on - strand, within MIT1002_00690 at 755.053 kb on + strand, within MIT1002_00690 at 755.084 kb on + strand, within MIT1002_00690 at 755.091 kb on - strand, within MIT1002_00690 at 755.149 kb on - strand, within MIT1002_00690 at 755.156 kb on + strand, within MIT1002_00690 at 755.186 kb on - strand, within MIT1002_00690 at 755.190 kb on + strand, within MIT1002_00690 at 755.224 kb on + strand, within MIT1002_00690 at 755.224 kb on + strand, within MIT1002_00690 at 755.232 kb on - strand, within MIT1002_00690 at 755.279 kb on + strand, within MIT1002_00690 at 755.295 kb on + strand, within MIT1002_00690 at 755.382 kb on + strand, within MIT1002_00690 at 755.385 kb on - strand, within MIT1002_00690 at 755.428 kb on - strand, within MIT1002_00690 at 755.440 kb on - strand at 755.453 kb on + strand at 755.486 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5 remove 752,324 + MIT1002_00687 0.45 +0.0 752,340 + MIT1002_00687 0.48 +0.3 752,381 - MIT1002_00687 0.56 -3.6 752,393 + MIT1002_00687 0.58 +0.2 752,412 + MIT1002_00687 0.62 +1.1 752,419 - MIT1002_00687 0.63 -0.3 752,420 - MIT1002_00687 0.63 +0.9 752,430 + MIT1002_00687 0.65 +1.1 752,437 + MIT1002_00687 0.67 -0.4 752,439 + MIT1002_00687 0.67 +0.8 752,439 + MIT1002_00687 0.67 -0.4 752,439 + MIT1002_00687 0.67 +1.4 752,447 - MIT1002_00687 0.69 -3.0 752,447 - MIT1002_00687 0.69 -1.0 752,463 - MIT1002_00687 0.72 +1.9 752,489 - MIT1002_00687 0.77 -0.5 752,500 + MIT1002_00687 0.79 +0.2 752,510 + MIT1002_00687 0.81 +0.3 752,515 + MIT1002_00687 0.82 +1.3 752,527 + MIT1002_00687 0.84 -0.2 752,535 - MIT1002_00687 0.86 +1.5 752,544 - MIT1002_00687 0.87 +1.5 752,585 + -1.2 752,619 + +1.1 752,619 - -3.0 752,709 + MIT1002_00688 0.10 -1.4 752,797 + MIT1002_00688 0.25 +0.0 752,807 + MIT1002_00688 0.26 +0.0 752,815 - MIT1002_00688 0.28 +1.0 752,879 + MIT1002_00688 0.38 -1.4 752,889 + MIT1002_00688 0.40 -0.7 752,897 - MIT1002_00688 0.41 +0.7 752,968 - MIT1002_00688 0.53 +0.2 753,050 + MIT1002_00688 0.66 -0.2 753,076 + MIT1002_00688 0.70 +0.7 753,084 + MIT1002_00688 0.72 +0.6 753,097 - MIT1002_00688 0.74 -3.1 753,097 - MIT1002_00688 0.74 -0.7 753,143 + MIT1002_00688 0.81 +0.4 753,151 - MIT1002_00688 0.83 +1.1 753,165 + MIT1002_00688 0.85 +1.2 753,303 + -0.7 753,320 + +1.0 753,347 + +0.9 753,393 + -1.6 753,548 - MIT1002_00689 0.20 +0.6 753,634 + MIT1002_00689 0.27 +3.3 753,636 - MIT1002_00689 0.27 -0.7 753,656 + MIT1002_00689 0.28 -0.9 753,713 + MIT1002_00689 0.33 +3.2 753,713 + MIT1002_00689 0.33 -0.1 753,714 - MIT1002_00689 0.33 -0.0 753,734 + MIT1002_00689 0.35 +0.2 753,742 - MIT1002_00689 0.35 +0.6 753,751 + MIT1002_00689 0.36 +0.2 753,793 + MIT1002_00689 0.40 +1.8 753,801 - MIT1002_00689 0.40 +2.0 753,801 - MIT1002_00689 0.40 +0.9 753,872 - MIT1002_00689 0.46 +0.2 753,893 - MIT1002_00689 0.48 +0.3 753,893 - MIT1002_00689 0.48 +0.8 753,967 - MIT1002_00689 0.54 +1.2 754,096 + MIT1002_00689 0.64 +2.9 754,096 + MIT1002_00689 0.64 -2.2 754,104 - MIT1002_00689 0.65 -1.0 754,104 - MIT1002_00689 0.65 +0.3 754,113 + MIT1002_00689 0.66 -0.7 754,153 + MIT1002_00689 0.69 -1.3 754,172 + MIT1002_00689 0.70 +1.9 754,232 + MIT1002_00689 0.75 +0.6 754,246 - MIT1002_00689 0.76 -0.6 754,420 - -0.3 754,421 - +0.8 754,443 + -1.1 754,443 + -2.7 754,443 + -0.4 754,448 + +0.3 754,638 + -1.1 754,638 + -0.6 754,646 - -2.2 754,674 + -2.9 754,679 + +1.2 754,895 - +0.6 754,950 + MIT1002_00690 0.15 -0.4 754,950 + MIT1002_00690 0.15 +0.4 754,991 - MIT1002_00690 0.21 -0.2 755,001 - MIT1002_00690 0.23 +0.2 755,053 + MIT1002_00690 0.31 +1.6 755,084 + MIT1002_00690 0.36 -0.9 755,091 - MIT1002_00690 0.37 -0.2 755,149 - MIT1002_00690 0.46 -0.6 755,156 + MIT1002_00690 0.47 +0.7 755,186 - MIT1002_00690 0.52 -0.7 755,190 + MIT1002_00690 0.52 -1.1 755,224 + MIT1002_00690 0.57 +0.2 755,224 + MIT1002_00690 0.57 -0.9 755,232 - MIT1002_00690 0.59 -1.0 755,279 + MIT1002_00690 0.66 -0.2 755,295 + MIT1002_00690 0.69 +1.3 755,382 + MIT1002_00690 0.82 -0.9 755,385 - MIT1002_00690 0.83 -0.2 755,428 - MIT1002_00690 0.89 -1.4 755,440 - -1.5 755,453 + +0.5 755,486 + +2.1
Or see this region's nucleotide sequence