Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00433 and MIT1002_00434 are separated by 65 nucleotides MIT1002_00434 and MIT1002_00435 are separated by 117 nucleotides MIT1002_00435 and MIT1002_00436 are separated by 13 nucleotides
MIT1002_00433: MIT1002_00433 - Cyclic di-GMP phosphodiesterase Gmr, at 472,576 to 474,744
_00433
MIT1002_00434: MIT1002_00434 - hypothetical protein, at 474,810 to 475,616
_00434
MIT1002_00435: MIT1002_00435 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 475,734 to 477,203
_00435
MIT1002_00436: MIT1002_00436 - Arginine N-succinyltransferase subunit beta, at 477,217 to 478,254
_00436
Position (kb) 475
476
477
478 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 474.776 kb on + strand at 474.961 kb on - strand, within MIT1002_00434 at 475.029 kb on + strand, within MIT1002_00434 at 475.062 kb on + strand, within MIT1002_00434 at 475.097 kb on + strand, within MIT1002_00434 at 475.105 kb on - strand, within MIT1002_00434 at 475.183 kb on - strand, within MIT1002_00434 at 475.187 kb on - strand, within MIT1002_00434 at 475.206 kb on + strand, within MIT1002_00434 at 475.364 kb on + strand, within MIT1002_00434 at 475.401 kb on + strand, within MIT1002_00434 at 475.402 kb on + strand, within MIT1002_00434 at 475.532 kb on - strand, within MIT1002_00434 at 475.532 kb on - strand, within MIT1002_00434 at 475.584 kb on - strand at 475.675 kb on + strand at 475.675 kb on + strand at 475.675 kb on + strand at 475.675 kb on + strand at 475.683 kb on - strand at 475.683 kb on - strand at 475.707 kb on + strand at 475.728 kb on - strand at 475.731 kb on + strand at 475.812 kb on + strand at 475.820 kb on - strand at 475.820 kb on - strand at 475.820 kb on - strand at 475.845 kb on - strand at 475.908 kb on - strand, within MIT1002_00435 at 475.994 kb on + strand, within MIT1002_00435 at 476.060 kb on + strand, within MIT1002_00435 at 476.267 kb on + strand, within MIT1002_00435 at 476.320 kb on + strand, within MIT1002_00435 at 476.323 kb on - strand, within MIT1002_00435 at 476.325 kb on + strand, within MIT1002_00435 at 476.328 kb on - strand, within MIT1002_00435 at 476.328 kb on - strand, within MIT1002_00435 at 476.354 kb on - strand, within MIT1002_00435 at 476.354 kb on - strand, within MIT1002_00435 at 476.360 kb on + strand, within MIT1002_00435 at 476.370 kb on - strand, within MIT1002_00435 at 476.375 kb on + strand, within MIT1002_00435 at 476.375 kb on + strand, within MIT1002_00435 at 476.433 kb on - strand, within MIT1002_00435 at 476.497 kb on + strand, within MIT1002_00435 at 476.505 kb on - strand, within MIT1002_00435 at 476.505 kb on - strand, within MIT1002_00435 at 476.505 kb on - strand, within MIT1002_00435 at 476.582 kb on - strand, within MIT1002_00435 at 476.583 kb on - strand, within MIT1002_00435 at 476.611 kb on + strand, within MIT1002_00435 at 476.614 kb on - strand, within MIT1002_00435 at 476.614 kb on - strand, within MIT1002_00435 at 476.619 kb on - strand, within MIT1002_00435 at 476.621 kb on - strand, within MIT1002_00435 at 476.621 kb on - strand, within MIT1002_00435 at 476.641 kb on - strand, within MIT1002_00435 at 476.644 kb on + strand, within MIT1002_00435 at 476.816 kb on - strand, within MIT1002_00435 at 477.000 kb on - strand, within MIT1002_00435 at 477.150 kb on + strand at 477.158 kb on - strand at 477.158 kb on - strand at 477.158 kb on - strand at 477.158 kb on - strand at 477.178 kb on - strand at 477.224 kb on - strand at 477.388 kb on + strand, within MIT1002_00436 at 477.436 kb on + strand, within MIT1002_00436 at 477.444 kb on - strand, within MIT1002_00436 at 477.444 kb on - strand, within MIT1002_00436 at 477.444 kb on - strand, within MIT1002_00436 at 477.446 kb on + strand, within MIT1002_00436 at 477.989 kb on - strand, within MIT1002_00436 at 478.136 kb on + strand, within MIT1002_00436
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5 remove 474,776 + -1.8 474,961 - MIT1002_00434 0.19 -1.8 475,029 + MIT1002_00434 0.27 +0.4 475,062 + MIT1002_00434 0.31 -1.3 475,097 + MIT1002_00434 0.36 +1.1 475,105 - MIT1002_00434 0.37 +0.2 475,183 - MIT1002_00434 0.46 +0.3 475,187 - MIT1002_00434 0.47 -0.3 475,206 + MIT1002_00434 0.49 +0.2 475,364 + MIT1002_00434 0.69 +0.3 475,401 + MIT1002_00434 0.73 +1.5 475,402 + MIT1002_00434 0.73 +0.5 475,532 - MIT1002_00434 0.89 +0.2 475,532 - MIT1002_00434 0.89 -0.4 475,584 - +0.3 475,675 + -0.1 475,675 + -1.9 475,675 + -1.8 475,675 + +1.0 475,683 - +1.9 475,683 - -1.1 475,707 + +0.7 475,728 - -0.2 475,731 + +0.4 475,812 + -1.5 475,820 - +1.5 475,820 - -1.9 475,820 - +0.2 475,845 - -3.2 475,908 - MIT1002_00435 0.12 +0.7 475,994 + MIT1002_00435 0.18 -2.0 476,060 + MIT1002_00435 0.22 -1.6 476,267 + MIT1002_00435 0.36 -0.5 476,320 + MIT1002_00435 0.40 -1.5 476,323 - MIT1002_00435 0.40 -0.6 476,325 + MIT1002_00435 0.40 -1.3 476,328 - MIT1002_00435 0.40 -1.5 476,328 - MIT1002_00435 0.40 +0.8 476,354 - MIT1002_00435 0.42 -1.8 476,354 - MIT1002_00435 0.42 -0.3 476,360 + MIT1002_00435 0.43 -1.4 476,370 - MIT1002_00435 0.43 -1.5 476,375 + MIT1002_00435 0.44 -3.2 476,375 + MIT1002_00435 0.44 +0.3 476,433 - MIT1002_00435 0.48 +2.0 476,497 + MIT1002_00435 0.52 -2.8 476,505 - MIT1002_00435 0.52 +0.2 476,505 - MIT1002_00435 0.52 +1.7 476,505 - MIT1002_00435 0.52 +0.2 476,582 - MIT1002_00435 0.58 -1.3 476,583 - MIT1002_00435 0.58 -0.7 476,611 + MIT1002_00435 0.60 +0.2 476,614 - MIT1002_00435 0.60 -1.7 476,614 - MIT1002_00435 0.60 +0.2 476,619 - MIT1002_00435 0.60 -0.7 476,621 - MIT1002_00435 0.60 -2.2 476,621 - MIT1002_00435 0.60 +1.0 476,641 - MIT1002_00435 0.62 -1.3 476,644 + MIT1002_00435 0.62 -2.1 476,816 - MIT1002_00435 0.74 -1.8 477,000 - MIT1002_00435 0.86 -2.5 477,150 + -1.7 477,158 - -1.6 477,158 - -0.7 477,158 - -0.7 477,158 - -1.6 477,178 - -3.7 477,224 - +0.0 477,388 + MIT1002_00436 0.16 -3.3 477,436 + MIT1002_00436 0.21 -2.7 477,444 - MIT1002_00436 0.22 +0.6 477,444 - MIT1002_00436 0.22 -1.6 477,444 - MIT1002_00436 0.22 -0.4 477,446 + MIT1002_00436 0.22 -1.4 477,989 - MIT1002_00436 0.74 -1.3 478,136 + MIT1002_00436 0.89 -3.2
Or see this region's nucleotide sequence