Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00208

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00207 and MIT1002_00208 are separated by 2 nucleotidesMIT1002_00208 and MIT1002_00209 overlap by 4 nucleotides MIT1002_00207: MIT1002_00207 - Pectic enzymes secretion protein OutD, at 229,037 to 230,785 _00207 MIT1002_00208: MIT1002_00208 - putative secretion ATPase, PEP-CTERM locus subfamily, at 230,788 to 231,690 _00208 MIT1002_00209: MIT1002_00209 - putative PEP-CTERM system TPR-repeat lipoprotein, at 231,687 to 232,913 _00209 Position (kb) 230 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 229.793 kb on - strand, within MIT1002_00207at 229.797 kb on + strand, within MIT1002_00207at 229.819 kb on - strand, within MIT1002_00207at 229.826 kb on + strand, within MIT1002_00207at 229.834 kb on - strand, within MIT1002_00207at 229.834 kb on - strand, within MIT1002_00207at 229.898 kb on + strand, within MIT1002_00207at 229.920 kb on - strand, within MIT1002_00207at 229.932 kb on + strand, within MIT1002_00207at 229.932 kb on + strand, within MIT1002_00207at 229.932 kb on + strand, within MIT1002_00207at 230.013 kb on + strand, within MIT1002_00207at 230.118 kb on + strand, within MIT1002_00207at 230.204 kb on + strand, within MIT1002_00207at 230.221 kb on + strand, within MIT1002_00207at 230.221 kb on + strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.228 kb on - strand, within MIT1002_00207at 230.257 kb on + strand, within MIT1002_00207at 230.304 kb on + strand, within MIT1002_00207at 230.380 kb on + strand, within MIT1002_00207at 230.422 kb on - strand, within MIT1002_00207at 230.456 kb on - strand, within MIT1002_00207at 230.510 kb on + strand, within MIT1002_00207at 230.674 kb on + strandat 230.679 kb on + strandat 230.682 kb on - strandat 230.682 kb on - strandat 230.695 kb on - strandat 230.704 kb on + strandat 230.755 kb on + strandat 230.755 kb on + strandat 230.866 kb on + strandat 230.904 kb on + strand, within MIT1002_00208at 230.904 kb on + strand, within MIT1002_00208at 230.907 kb on - strand, within MIT1002_00208at 231.020 kb on + strand, within MIT1002_00208at 231.064 kb on + strand, within MIT1002_00208at 231.111 kb on - strand, within MIT1002_00208at 231.121 kb on - strand, within MIT1002_00208at 231.121 kb on - strand, within MIT1002_00208at 231.163 kb on + strand, within MIT1002_00208at 231.269 kb on + strand, within MIT1002_00208at 231.279 kb on + strand, within MIT1002_00208at 231.287 kb on - strand, within MIT1002_00208at 231.287 kb on - strand, within MIT1002_00208at 231.306 kb on + strand, within MIT1002_00208at 231.314 kb on - strand, within MIT1002_00208at 231.404 kb on + strand, within MIT1002_00208at 231.416 kb on + strand, within MIT1002_00208at 231.434 kb on + strand, within MIT1002_00208at 231.449 kb on + strand, within MIT1002_00208at 231.457 kb on - strand, within MIT1002_00208at 231.479 kb on - strand, within MIT1002_00208at 231.521 kb on + strand, within MIT1002_00208at 231.526 kb on + strand, within MIT1002_00208at 231.529 kb on - strand, within MIT1002_00208at 231.529 kb on - strand, within MIT1002_00208at 231.539 kb on - strand, within MIT1002_00208at 231.590 kb on - strand, within MIT1002_00208at 231.610 kb on + strandat 231.613 kb on - strandat 231.706 kb on + strandat 231.706 kb on + strandat 231.760 kb on - strandat 231.787 kb on + strandat 231.787 kb on + strandat 231.787 kb on + strandat 231.787 kb on + strandat 231.795 kb on - strandat 231.795 kb on - strandat 231.795 kb on - strandat 231.864 kb on - strand, within MIT1002_00209at 231.895 kb on - strand, within MIT1002_00209at 231.992 kb on + strand, within MIT1002_00209at 232.118 kb on - strand, within MIT1002_00209at 232.135 kb on - strand, within MIT1002_00209at 232.156 kb on + strand, within MIT1002_00209at 232.159 kb on - strand, within MIT1002_00209at 232.182 kb on + strand, within MIT1002_00209at 232.182 kb on + strand, within MIT1002_00209at 232.207 kb on - strand, within MIT1002_00209at 232.207 kb on - strand, within MIT1002_00209at 232.213 kb on + strand, within MIT1002_00209at 232.276 kb on - strand, within MIT1002_00209at 232.276 kb on - strand, within MIT1002_00209at 232.276 kb on - strand, within MIT1002_00209at 232.306 kb on - strand, within MIT1002_00209at 232.334 kb on + strand, within MIT1002_00209at 232.339 kb on + strand, within MIT1002_00209at 232.376 kb on - strand, within MIT1002_00209at 232.411 kb on + strand, within MIT1002_00209at 232.508 kb on - strand, within MIT1002_00209at 232.649 kb on - strand, within MIT1002_00209at 232.681 kb on - strand, within MIT1002_00209at 232.683 kb on + strand, within MIT1002_00209at 232.686 kb on - strand, within MIT1002_00209

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
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229,793 - MIT1002_00207 0.43 +2.9
229,797 + MIT1002_00207 0.43 -0.1
229,819 - MIT1002_00207 0.45 +1.2
229,826 + MIT1002_00207 0.45 +0.8
229,834 - MIT1002_00207 0.46 +1.6
229,834 - MIT1002_00207 0.46 +0.6
229,898 + MIT1002_00207 0.49 +2.5
229,920 - MIT1002_00207 0.50 +0.3
229,932 + MIT1002_00207 0.51 +1.4
229,932 + MIT1002_00207 0.51 +0.6
229,932 + MIT1002_00207 0.51 -0.4
230,013 + MIT1002_00207 0.56 +0.9
230,118 + MIT1002_00207 0.62 +2.1
230,204 + MIT1002_00207 0.67 +0.8
230,221 + MIT1002_00207 0.68 -2.3
230,221 + MIT1002_00207 0.68 +1.0
230,228 - MIT1002_00207 0.68 +0.7
230,228 - MIT1002_00207 0.68 +0.4
230,228 - MIT1002_00207 0.68 +1.0
230,228 - MIT1002_00207 0.68 -0.8
230,257 + MIT1002_00207 0.70 +0.9
230,304 + MIT1002_00207 0.72 +2.1
230,380 + MIT1002_00207 0.77 -1.5
230,422 - MIT1002_00207 0.79 +0.4
230,456 - MIT1002_00207 0.81 +0.5
230,510 + MIT1002_00207 0.84 +1.1
230,674 + -1.4
230,679 + +0.6
230,682 - +0.7
230,682 - -0.6
230,695 - +1.2
230,704 + +1.7
230,755 + +1.5
230,755 + +0.6
230,866 + +1.0
230,904 + MIT1002_00208 0.13 +0.6
230,904 + MIT1002_00208 0.13 +1.1
230,907 - MIT1002_00208 0.13 +0.6
231,020 + MIT1002_00208 0.26 +2.0
231,064 + MIT1002_00208 0.31 +0.2
231,111 - MIT1002_00208 0.36 +1.2
231,121 - MIT1002_00208 0.37 +2.0
231,121 - MIT1002_00208 0.37 +1.2
231,163 + MIT1002_00208 0.42 +0.2
231,269 + MIT1002_00208 0.53 +1.6
231,279 + MIT1002_00208 0.54 +1.7
231,287 - MIT1002_00208 0.55 +1.3
231,287 - MIT1002_00208 0.55 +1.7
231,306 + MIT1002_00208 0.57 +0.6
231,314 - MIT1002_00208 0.58 +0.2
231,404 + MIT1002_00208 0.68 +1.4
231,416 + MIT1002_00208 0.70 +2.5
231,434 + MIT1002_00208 0.72 +1.0
231,449 + MIT1002_00208 0.73 +0.5
231,457 - MIT1002_00208 0.74 +0.7
231,479 - MIT1002_00208 0.77 +0.8
231,521 + MIT1002_00208 0.81 +0.8
231,526 + MIT1002_00208 0.82 +0.9
231,529 - MIT1002_00208 0.82 -1.2
231,529 - MIT1002_00208 0.82 +0.9
231,539 - MIT1002_00208 0.83 -0.2
231,590 - MIT1002_00208 0.89 +1.5
231,610 + -1.0
231,613 - +0.2
231,706 + +0.4
231,706 + -0.2
231,760 - +1.7
231,787 + +2.0
231,787 + +0.6
231,787 + +2.1
231,787 + -0.7
231,795 - -0.1
231,795 - +2.6
231,795 - +3.1
231,864 - MIT1002_00209 0.14 +0.2
231,895 - MIT1002_00209 0.17 +2.5
231,992 + MIT1002_00209 0.25 +0.7
232,118 - MIT1002_00209 0.35 +1.3
232,135 - MIT1002_00209 0.37 +0.8
232,156 + MIT1002_00209 0.38 +1.5
232,159 - MIT1002_00209 0.38 +0.5
232,182 + MIT1002_00209 0.40 +0.5
232,182 + MIT1002_00209 0.40 +1.1
232,207 - MIT1002_00209 0.42 +2.0
232,207 - MIT1002_00209 0.42 +1.5
232,213 + MIT1002_00209 0.43 +1.9
232,276 - MIT1002_00209 0.48 +1.4
232,276 - MIT1002_00209 0.48 -1.1
232,276 - MIT1002_00209 0.48 +0.9
232,306 - MIT1002_00209 0.50 -2.8
232,334 + MIT1002_00209 0.53 +0.7
232,339 + MIT1002_00209 0.53 +0.3
232,376 - MIT1002_00209 0.56 +0.4
232,411 + MIT1002_00209 0.59 +1.4
232,508 - MIT1002_00209 0.67 +0.4
232,649 - MIT1002_00209 0.78 +2.6
232,681 - MIT1002_00209 0.81 +0.3
232,683 + MIT1002_00209 0.81 +2.1
232,686 - MIT1002_00209 0.81 +1.3

Or see this region's nucleotide sequence