Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00156

Experiment: Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00155 and MIT1002_00156 are separated by 168 nucleotidesMIT1002_00156 and MIT1002_00157 are separated by 20 nucleotidesMIT1002_00157 and MIT1002_00158 are separated by 5 nucleotides MIT1002_00155: MIT1002_00155 - Diguanylate cyclase DosC, at 171,602 to 173,110 _00155 MIT1002_00156: MIT1002_00156 - Flavin mononucleotide phosphatase YigB, at 173,279 to 174,019 _00156 MIT1002_00157: MIT1002_00157 - Tyrosine recombinase XerC, at 174,040 to 174,960 _00157 MIT1002_00158: MIT1002_00158 - hypothetical protein, at 174,966 to 175,661 _00158 Position (kb) 173 174 175Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.283 kb on - strand, within MIT1002_00155at 172.285 kb on + strand, within MIT1002_00155at 172.285 kb on + strand, within MIT1002_00155at 172.293 kb on - strand, within MIT1002_00155at 172.335 kb on + strand, within MIT1002_00155at 172.338 kb on - strand, within MIT1002_00155at 172.364 kb on - strand, within MIT1002_00155at 172.366 kb on + strand, within MIT1002_00155at 172.486 kb on + strand, within MIT1002_00155at 172.496 kb on + strand, within MIT1002_00155at 172.498 kb on + strand, within MIT1002_00155at 172.506 kb on - strand, within MIT1002_00155at 172.506 kb on - strand, within MIT1002_00155at 172.507 kb on - strand, within MIT1002_00155at 172.615 kb on + strand, within MIT1002_00155at 172.704 kb on - strand, within MIT1002_00155at 172.718 kb on + strand, within MIT1002_00155at 172.741 kb on + strand, within MIT1002_00155at 172.762 kb on - strand, within MIT1002_00155at 172.842 kb on - strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.874 kb on + strand, within MIT1002_00155at 172.881 kb on - strand, within MIT1002_00155at 172.882 kb on - strand, within MIT1002_00155at 172.882 kb on - strand, within MIT1002_00155at 172.882 kb on - strand, within MIT1002_00155at 172.882 kb on - strand, within MIT1002_00155at 172.904 kb on + strand, within MIT1002_00155at 172.904 kb on + strand, within MIT1002_00155at 172.909 kb on + strand, within MIT1002_00155at 172.916 kb on + strand, within MIT1002_00155at 172.924 kb on - strand, within MIT1002_00155at 172.958 kb on - strand, within MIT1002_00155at 173.022 kb on + strandat 173.041 kb on + strandat 173.060 kb on - strandat 173.069 kb on - strandat 173.093 kb on - strandat 173.095 kb on - strandat 173.174 kb on + strandat 173.174 kb on + strandat 173.174 kb on - strandat 173.188 kb on + strandat 173.188 kb on - strandat 173.196 kb on - strandat 173.196 kb on - strandat 173.196 kb on - strandat 173.213 kb on + strandat 173.213 kb on + strandat 173.379 kb on - strand, within MIT1002_00156at 173.409 kb on - strand, within MIT1002_00156at 173.448 kb on - strand, within MIT1002_00156at 173.458 kb on + strand, within MIT1002_00156at 173.458 kb on + strand, within MIT1002_00156at 173.463 kb on + strand, within MIT1002_00156at 173.466 kb on - strand, within MIT1002_00156at 173.471 kb on - strand, within MIT1002_00156at 173.495 kb on + strand, within MIT1002_00156at 173.495 kb on + strand, within MIT1002_00156at 173.503 kb on - strand, within MIT1002_00156at 173.518 kb on + strand, within MIT1002_00156at 173.521 kb on + strand, within MIT1002_00156at 173.526 kb on - strand, within MIT1002_00156at 173.555 kb on + strand, within MIT1002_00156at 173.562 kb on - strand, within MIT1002_00156at 173.634 kb on + strand, within MIT1002_00156at 173.641 kb on - strand, within MIT1002_00156at 173.642 kb on - strand, within MIT1002_00156at 173.644 kb on - strand, within MIT1002_00156at 173.699 kb on + strand, within MIT1002_00156at 173.699 kb on + strand, within MIT1002_00156at 173.699 kb on + strand, within MIT1002_00156at 173.699 kb on + strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.707 kb on - strand, within MIT1002_00156at 173.731 kb on - strand, within MIT1002_00156at 173.731 kb on - strand, within MIT1002_00156at 173.760 kb on + strand, within MIT1002_00156at 173.773 kb on - strand, within MIT1002_00156at 173.777 kb on + strand, within MIT1002_00156at 173.777 kb on + strand, within MIT1002_00156at 173.795 kb on + strand, within MIT1002_00156at 173.811 kb on + strand, within MIT1002_00156at 173.852 kb on - strand, within MIT1002_00156at 173.911 kb on + strand, within MIT1002_00156at 173.926 kb on - strand, within MIT1002_00156at 173.931 kb on - strand, within MIT1002_00156at 173.968 kb on - strandat 173.971 kb on + strandat 173.971 kb on + strandat 173.972 kb on + strandat 173.973 kb on - strandat 173.986 kb on - strandat 174.002 kb on - strandat 174.043 kb on + strandat 174.060 kb on + strandat 174.106 kb on + strandat 174.106 kb on + strandat 174.106 kb on + strandat 174.106 kb on + strandat 174.107 kb on + strandat 174.107 kb on + strandat 174.114 kb on - strandat 174.114 kb on - strandat 174.115 kb on - strandat 174.140 kb on + strand, within MIT1002_00157at 174.156 kb on - strand, within MIT1002_00157at 174.349 kb on + strand, within MIT1002_00157at 174.425 kb on + strand, within MIT1002_00157at 174.433 kb on - strand, within MIT1002_00157at 174.447 kb on + strand, within MIT1002_00157at 174.447 kb on + strand, within MIT1002_00157at 174.453 kb on - strand, within MIT1002_00157at 174.455 kb on - strand, within MIT1002_00157at 174.495 kb on + strand, within MIT1002_00157at 174.495 kb on + strand, within MIT1002_00157at 174.502 kb on + strand, within MIT1002_00157at 174.503 kb on - strand, within MIT1002_00157at 174.503 kb on - strand, within MIT1002_00157at 174.528 kb on + strand, within MIT1002_00157at 174.553 kb on - strand, within MIT1002_00157at 174.587 kb on - strand, within MIT1002_00157at 174.672 kb on - strand, within MIT1002_00157at 174.712 kb on - strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.726 kb on + strand, within MIT1002_00157at 174.728 kb on + strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.734 kb on - strand, within MIT1002_00157at 174.793 kb on + strand, within MIT1002_00157at 174.805 kb on - strand, within MIT1002_00157at 174.824 kb on - strand, within MIT1002_00157at 174.865 kb on + strand, within MIT1002_00157at 174.891 kb on + strandat 174.892 kb on - strandat 174.892 kb on - strandat 174.927 kb on + strandat 174.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MIT9313; Experiment C, time point 5
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172,283 - MIT1002_00155 0.45 -0.4
172,283 - MIT1002_00155 0.45 -1.7
172,283 - MIT1002_00155 0.45 +2.0
172,283 - MIT1002_00155 0.45 -0.5
172,283 - MIT1002_00155 0.45 +0.4
172,283 - MIT1002_00155 0.45 +0.7
172,283 - MIT1002_00155 0.45 -0.2
172,283 - MIT1002_00155 0.45 +2.4
172,283 - MIT1002_00155 0.45 -1.8
172,283 - MIT1002_00155 0.45 -1.2
172,285 + MIT1002_00155 0.45 -0.1
172,285 + MIT1002_00155 0.45 +1.8
172,293 - MIT1002_00155 0.46 +0.1
172,335 + MIT1002_00155 0.49 -0.5
172,338 - MIT1002_00155 0.49 -1.5
172,364 - MIT1002_00155 0.50 +1.4
172,366 + MIT1002_00155 0.51 +0.0
172,486 + MIT1002_00155 0.59 +0.3
172,496 + MIT1002_00155 0.59 -0.8
172,498 + MIT1002_00155 0.59 +0.3
172,506 - MIT1002_00155 0.60 +0.3
172,506 - MIT1002_00155 0.60 -1.1
172,507 - MIT1002_00155 0.60 -0.2
172,615 + MIT1002_00155 0.67 -3.4
172,704 - MIT1002_00155 0.73 +0.8
172,718 + MIT1002_00155 0.74 +1.4
172,741 + MIT1002_00155 0.75 -0.8
172,762 - MIT1002_00155 0.77 -0.7
172,842 - MIT1002_00155 0.82 -3.2
172,874 + MIT1002_00155 0.84 -0.3
172,874 + MIT1002_00155 0.84 -0.8
172,874 + MIT1002_00155 0.84 -0.4
172,874 + MIT1002_00155 0.84 +0.3
172,874 + MIT1002_00155 0.84 -0.2
172,874 + MIT1002_00155 0.84 +0.9
172,874 + MIT1002_00155 0.84 +0.7
172,874 + MIT1002_00155 0.84 +0.5
172,881 - MIT1002_00155 0.85 +0.5
172,882 - MIT1002_00155 0.85 +2.6
172,882 - MIT1002_00155 0.85 -1.0
172,882 - MIT1002_00155 0.85 -1.5
172,882 - MIT1002_00155 0.85 +0.0
172,904 + MIT1002_00155 0.86 -0.1
172,904 + MIT1002_00155 0.86 +0.1
172,909 + MIT1002_00155 0.87 -2.7
172,916 + MIT1002_00155 0.87 +0.2
172,924 - MIT1002_00155 0.88 +0.6
172,958 - MIT1002_00155 0.90 +0.8
173,022 + +1.3
173,041 + -0.4
173,060 - +1.9
173,069 - +1.2
173,093 - -0.0
173,095 - -0.8
173,174 + +0.1
173,174 + +0.4
173,174 - +1.0
173,188 + -0.2
173,188 - +1.6
173,196 - +0.3
173,196 - +0.2
173,196 - +0.6
173,213 + +0.4
173,213 + +0.9
173,379 - MIT1002_00156 0.13 -1.7
173,409 - MIT1002_00156 0.18 -0.5
173,448 - MIT1002_00156 0.23 -0.9
173,458 + MIT1002_00156 0.24 -3.0
173,458 + MIT1002_00156 0.24 -2.3
173,463 + MIT1002_00156 0.25 -0.2
173,466 - MIT1002_00156 0.25 -1.8
173,471 - MIT1002_00156 0.26 -1.6
173,495 + MIT1002_00156 0.29 -1.5
173,495 + MIT1002_00156 0.29 -1.5
173,503 - MIT1002_00156 0.30 -1.7
173,518 + MIT1002_00156 0.32 -0.3
173,521 + MIT1002_00156 0.33 -1.4
173,526 - MIT1002_00156 0.33 +0.5
173,555 + MIT1002_00156 0.37 -0.1
173,562 - MIT1002_00156 0.38 -1.6
173,634 + MIT1002_00156 0.48 +0.5
173,641 - MIT1002_00156 0.49 +0.8
173,642 - MIT1002_00156 0.49 -4.0
173,644 - MIT1002_00156 0.49 +0.6
173,699 + MIT1002_00156 0.57 -2.1
173,699 + MIT1002_00156 0.57 -0.7
173,699 + MIT1002_00156 0.57 +0.6
173,699 + MIT1002_00156 0.57 +0.0
173,707 - MIT1002_00156 0.58 +0.9
173,707 - MIT1002_00156 0.58 -0.2
173,707 - MIT1002_00156 0.58 -1.1
173,707 - MIT1002_00156 0.58 -1.8
173,707 - MIT1002_00156 0.58 -1.4
173,707 - MIT1002_00156 0.58 +0.3
173,707 - MIT1002_00156 0.58 -3.3
173,707 - MIT1002_00156 0.58 -0.1
173,707 - MIT1002_00156 0.58 +0.0
173,707 - MIT1002_00156 0.58 -1.0
173,707 - MIT1002_00156 0.58 +1.6
173,731 - MIT1002_00156 0.61 -1.2
173,731 - MIT1002_00156 0.61 +0.1
173,760 + MIT1002_00156 0.65 +0.4
173,773 - MIT1002_00156 0.67 -1.1
173,777 + MIT1002_00156 0.67 +0.8
173,777 + MIT1002_00156 0.67 -2.3
173,795 + MIT1002_00156 0.70 +1.3
173,811 + MIT1002_00156 0.72 +0.0
173,852 - MIT1002_00156 0.77 -0.8
173,911 + MIT1002_00156 0.85 -1.3
173,926 - MIT1002_00156 0.87 +0.6
173,931 - MIT1002_00156 0.88 +1.9
173,968 - -0.2
173,971 + +0.7
173,971 + -0.1
173,972 + +0.0
173,973 - +3.2
173,986 - -1.1
174,002 - -0.5
174,043 + +0.4
174,060 + -0.2
174,106 + -1.1
174,106 + -0.1
174,106 + -0.4
174,106 + +1.9
174,107 + -1.0
174,107 + +0.3
174,114 - +0.9
174,114 - -1.7
174,115 - -0.8
174,140 + MIT1002_00157 0.11 -0.2
174,156 - MIT1002_00157 0.13 -2.3
174,349 + MIT1002_00157 0.34 -0.7
174,425 + MIT1002_00157 0.42 +0.3
174,433 - MIT1002_00157 0.43 -2.5
174,447 + MIT1002_00157 0.44 -0.6
174,447 + MIT1002_00157 0.44 +0.3
174,453 - MIT1002_00157 0.45 -1.9
174,455 - MIT1002_00157 0.45 -2.1
174,495 + MIT1002_00157 0.49 -1.2
174,495 + MIT1002_00157 0.49 +0.0
174,502 + MIT1002_00157 0.50 -0.3
174,503 - MIT1002_00157 0.50 -0.4
174,503 - MIT1002_00157 0.50 +0.5
174,528 + MIT1002_00157 0.53 +0.5
174,553 - MIT1002_00157 0.56 -1.1
174,587 - MIT1002_00157 0.59 -1.1
174,672 - MIT1002_00157 0.69 +0.7
174,712 - MIT1002_00157 0.73 +0.9
174,726 + MIT1002_00157 0.74 +0.3
174,726 + MIT1002_00157 0.74 +0.8
174,726 + MIT1002_00157 0.74 +1.2
174,726 + MIT1002_00157 0.74 +0.1
174,726 + MIT1002_00157 0.74 -1.7
174,726 + MIT1002_00157 0.74 +0.3
174,726 + MIT1002_00157 0.74 +0.0
174,726 + MIT1002_00157 0.74 +1.2
174,726 + MIT1002_00157 0.74 -0.4
174,726 + MIT1002_00157 0.74 +0.3
174,726 + MIT1002_00157 0.74 -1.5
174,728 + MIT1002_00157 0.75 +0.7
174,734 - MIT1002_00157 0.75 -0.2
174,734 - MIT1002_00157 0.75 +0.1
174,734 - MIT1002_00157 0.75 -0.5
174,734 - MIT1002_00157 0.75 -0.8
174,734 - MIT1002_00157 0.75 -0.7
174,734 - MIT1002_00157 0.75 +0.8
174,734 - MIT1002_00157 0.75 -1.0
174,734 - MIT1002_00157 0.75 +1.6
174,793 + MIT1002_00157 0.82 -1.7
174,805 - MIT1002_00157 0.83 +0.3
174,824 - MIT1002_00157 0.85 -1.9
174,865 + MIT1002_00157 0.90 +0.3
174,891 + +0.8
174,892 - +2.6
174,892 - +0.4
174,927 + +1.4
174,956 - +2.2

Or see this region's nucleotide sequence