Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15205

Experiment: planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS15190 and LRK53_RS15195 are separated by 103 nucleotidesLRK53_RS15195 and LRK53_RS15200 overlap by 4 nucleotidesLRK53_RS15200 and LRK53_RS15205 are separated by 107 nucleotidesLRK53_RS15205 and LRK53_RS15210 are separated by 25 nucleotides LRK53_RS15190: LRK53_RS15190 - flagellar basal body P-ring formation protein FlgA, at 3,315,895 to 3,316,623 _RS15190 LRK53_RS15195: LRK53_RS15195 - flagellar biosynthesis anti-sigma factor FlgM, at 3,316,727 to 3,317,050 _RS15195 LRK53_RS15200: LRK53_RS15200 - flagellar protein FlgN, at 3,317,047 to 3,317,493 _RS15200 LRK53_RS15205: LRK53_RS15205 - HDOD domain-containing protein, at 3,317,601 to 3,318,884 _RS15205 LRK53_RS15210: LRK53_RS15210 - TMEM43 family protein, at 3,318,910 to 3,319,944 _RS15210 Position (kb) 3317 3318 3319Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3316.696 kb on + strandat 3316.697 kb on - strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.732 kb on + strandat 3316.733 kb on - strandat 3316.733 kb on - strandat 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.973 kb on + strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3316.974 kb on - strand, within LRK53_RS15195at 3317.326 kb on + strand, within LRK53_RS15200at 3317.327 kb on - strand, within LRK53_RS15200at 3317.434 kb on + strand, within LRK53_RS15200at 3317.489 kb on + strandat 3317.489 kb on + strandat 3317.490 kb on - strandat 3318.177 kb on + strand, within LRK53_RS15205at 3318.177 kb on + strand, within LRK53_RS15205at 3318.177 kb on + strand, within LRK53_RS15205at 3318.177 kb on + strand, within LRK53_RS15205at 3318.178 kb on - strand, within LRK53_RS15205at 3318.178 kb on - strand, within LRK53_RS15205at 3318.222 kb on + strand, within LRK53_RS15205at 3318.358 kb on + strand, within LRK53_RS15205at 3318.358 kb on + strand, within LRK53_RS15205at 3318.359 kb on - strand, within LRK53_RS15205at 3318.366 kb on + strand, within LRK53_RS15205at 3318.366 kb on + strand, within LRK53_RS15205at 3318.366 kb on + strand, within LRK53_RS15205at 3318.366 kb on + strand, within LRK53_RS15205at 3318.366 kb on + strand, within LRK53_RS15205at 3318.366 kb on + strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.367 kb on - strand, within LRK53_RS15205at 3318.396 kb on + strand, within LRK53_RS15205at 3318.396 kb on + strand, within LRK53_RS15205at 3318.397 kb on - strand, within LRK53_RS15205at 3318.397 kb on - strand, within LRK53_RS15205at 3318.816 kb on + strandat 3318.816 kb on + strandat 3318.816 kb on + strandat 3318.816 kb on + strandat 3318.816 kb on + strandat 3318.817 kb on - strandat 3318.817 kb on - strandat 3318.817 kb on - strandat 3318.817 kb on - strandat 3318.817 kb on - strandat 3318.817 kb on - strandat 3318.817 kb on - strandat 3319.019 kb on - strand, within LRK53_RS15210at 3319.019 kb on - strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.214 kb on + strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.215 kb on - strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.364 kb on + strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.365 kb on - strand, within LRK53_RS15210at 3319.373 kb on + strand, within LRK53_RS15210at 3319.456 kb on + strand, within LRK53_RS15210at 3319.456 kb on + strand, within LRK53_RS15210at 3319.456 kb on + strand, within LRK53_RS15210at 3319.456 kb on + strand, within LRK53_RS15210at 3319.456 kb on + strand, within LRK53_RS15210at 3319.457 kb on - strand, within LRK53_RS15210at 3319.457 kb on - strand, within LRK53_RS15210at 3319.457 kb on - strand, within LRK53_RS15210at 3319.605 kb on - strand, within LRK53_RS15210at 3319.605 kb on - strand, within LRK53_RS15210at 3319.674 kb on + strand, within LRK53_RS15210at 3319.675 kb on - strand, within LRK53_RS15210at 3319.675 kb on - strand, within LRK53_RS15210at 3319.829 kb on + strand, within LRK53_RS15210at 3319.829 kb on + strand, within LRK53_RS15210at 3319.829 kb on + strand, within LRK53_RS15210at 3319.829 kb on + strand, within LRK53_RS15210at 3319.830 kb on - strand, within LRK53_RS15210at 3319.830 kb on - strand, within LRK53_RS15210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day2; NLDM; Manganese (II) chloride tetrahydrate 10mM
remove
3,316,696 + +0.1
3,316,697 - -1.1
3,316,732 + -0.6
3,316,732 + -1.3
3,316,732 + +1.2
3,316,732 + -0.1
3,316,732 + -0.7
3,316,732 + -1.3
3,316,732 + -0.3
3,316,733 - -0.2
3,316,733 - -1.2
3,316,973 + LRK53_RS15195 0.76 +0.1
3,316,973 + LRK53_RS15195 0.76 -1.4
3,316,973 + LRK53_RS15195 0.76 -1.0
3,316,973 + LRK53_RS15195 0.76 -1.5
3,316,973 + LRK53_RS15195 0.76 -2.2
3,316,973 + LRK53_RS15195 0.76 -2.0
3,316,973 + LRK53_RS15195 0.76 +0.2
3,316,973 + LRK53_RS15195 0.76 -1.9
3,316,974 - LRK53_RS15195 0.76 +2.9
3,316,974 - LRK53_RS15195 0.76 -0.7
3,316,974 - LRK53_RS15195 0.76 -0.9
3,316,974 - LRK53_RS15195 0.76 -1.7
3,316,974 - LRK53_RS15195 0.76 -0.5
3,316,974 - LRK53_RS15195 0.76 -1.9
3,316,974 - LRK53_RS15195 0.76 +0.3
3,316,974 - LRK53_RS15195 0.76 -0.5
3,317,326 + LRK53_RS15200 0.62 -2.2
3,317,327 - LRK53_RS15200 0.63 -0.1
3,317,434 + LRK53_RS15200 0.87 -1.8
3,317,489 + +0.4
3,317,489 + -0.8
3,317,490 - -0.9
3,318,177 + LRK53_RS15205 0.45 -0.1
3,318,177 + LRK53_RS15205 0.45 -1.3
3,318,177 + LRK53_RS15205 0.45 -1.9
3,318,177 + LRK53_RS15205 0.45 +2.4
3,318,178 - LRK53_RS15205 0.45 -1.1
3,318,178 - LRK53_RS15205 0.45 -1.5
3,318,222 + LRK53_RS15205 0.48 +0.8
3,318,358 + LRK53_RS15205 0.59 -1.2
3,318,358 + LRK53_RS15205 0.59 +0.3
3,318,359 - LRK53_RS15205 0.59 -1.8
3,318,366 + LRK53_RS15205 0.60 -0.5
3,318,366 + LRK53_RS15205 0.60 +0.2
3,318,366 + LRK53_RS15205 0.60 +0.4
3,318,366 + LRK53_RS15205 0.60 -0.3
3,318,366 + LRK53_RS15205 0.60 +0.3
3,318,366 + LRK53_RS15205 0.60 -0.1
3,318,367 - LRK53_RS15205 0.60 -0.5
3,318,367 - LRK53_RS15205 0.60 -1.2
3,318,367 - LRK53_RS15205 0.60 +2.9
3,318,367 - LRK53_RS15205 0.60 +1.7
3,318,367 - LRK53_RS15205 0.60 -2.2
3,318,367 - LRK53_RS15205 0.60 -0.4
3,318,367 - LRK53_RS15205 0.60 -0.4
3,318,367 - LRK53_RS15205 0.60 -0.1
3,318,367 - LRK53_RS15205 0.60 +0.5
3,318,367 - LRK53_RS15205 0.60 -1.0
3,318,367 - LRK53_RS15205 0.60 -0.7
3,318,396 + LRK53_RS15205 0.62 -0.3
3,318,396 + LRK53_RS15205 0.62 -0.6
3,318,397 - LRK53_RS15205 0.62 -1.1
3,318,397 - LRK53_RS15205 0.62 +0.2
3,318,816 + -0.6
3,318,816 + -0.2
3,318,816 + +1.2
3,318,816 + +0.5
3,318,816 + +0.5
3,318,817 - -0.3
3,318,817 - -1.9
3,318,817 - -1.0
3,318,817 - -1.8
3,318,817 - -0.4
3,318,817 - -0.2
3,318,817 - -0.6
3,319,019 - LRK53_RS15210 0.11 +0.4
3,319,019 - LRK53_RS15210 0.11 +0.9
3,319,214 + LRK53_RS15210 0.29 +0.5
3,319,214 + LRK53_RS15210 0.29 -0.6
3,319,214 + LRK53_RS15210 0.29 +0.9
3,319,214 + LRK53_RS15210 0.29 -1.0
3,319,214 + LRK53_RS15210 0.29 -2.0
3,319,214 + LRK53_RS15210 0.29 +0.1
3,319,214 + LRK53_RS15210 0.29 +0.3
3,319,214 + LRK53_RS15210 0.29 -0.1
3,319,214 + LRK53_RS15210 0.29 -0.5
3,319,215 - LRK53_RS15210 0.29 +1.7
3,319,215 - LRK53_RS15210 0.29 -0.0
3,319,215 - LRK53_RS15210 0.29 -0.6
3,319,215 - LRK53_RS15210 0.29 -0.8
3,319,215 - LRK53_RS15210 0.29 +0.1
3,319,215 - LRK53_RS15210 0.29 +0.1
3,319,215 - LRK53_RS15210 0.29 -0.7
3,319,215 - LRK53_RS15210 0.29 -1.5
3,319,215 - LRK53_RS15210 0.29 -1.0
3,319,215 - LRK53_RS15210 0.29 -0.2
3,319,215 - LRK53_RS15210 0.29 -0.7
3,319,364 + LRK53_RS15210 0.44 -1.2
3,319,364 + LRK53_RS15210 0.44 +0.1
3,319,364 + LRK53_RS15210 0.44 +0.2
3,319,364 + LRK53_RS15210 0.44 +0.1
3,319,364 + LRK53_RS15210 0.44 -1.1
3,319,364 + LRK53_RS15210 0.44 +0.2
3,319,364 + LRK53_RS15210 0.44 -2.2
3,319,364 + LRK53_RS15210 0.44 -0.9
3,319,365 - LRK53_RS15210 0.44 -0.2
3,319,365 - LRK53_RS15210 0.44 -1.3
3,319,365 - LRK53_RS15210 0.44 -0.1
3,319,365 - LRK53_RS15210 0.44 +1.5
3,319,365 - LRK53_RS15210 0.44 +0.4
3,319,365 - LRK53_RS15210 0.44 -0.1
3,319,365 - LRK53_RS15210 0.44 -0.1
3,319,373 + LRK53_RS15210 0.45 +0.0
3,319,456 + LRK53_RS15210 0.53 +0.4
3,319,456 + LRK53_RS15210 0.53 +0.6
3,319,456 + LRK53_RS15210 0.53 -2.7
3,319,456 + LRK53_RS15210 0.53 +0.1
3,319,456 + LRK53_RS15210 0.53 -0.7
3,319,457 - LRK53_RS15210 0.53 +0.9
3,319,457 - LRK53_RS15210 0.53 +0.9
3,319,457 - LRK53_RS15210 0.53 +0.9
3,319,605 - LRK53_RS15210 0.67 -0.3
3,319,605 - LRK53_RS15210 0.67 +1.7
3,319,674 + LRK53_RS15210 0.74 +0.2
3,319,675 - LRK53_RS15210 0.74 -0.9
3,319,675 - LRK53_RS15210 0.74 -1.9
3,319,829 + LRK53_RS15210 0.89 -0.8
3,319,829 + LRK53_RS15210 0.89 -0.9
3,319,829 + LRK53_RS15210 0.89 +0.3
3,319,829 + LRK53_RS15210 0.89 -0.6
3,319,830 - LRK53_RS15210 0.89 +1.3
3,319,830 - LRK53_RS15210 0.89 +0.4

Or see this region's nucleotide sequence