Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06978 and MPMX19_06979 are separated by 118 nucleotides MPMX19_06979 and MPMX19_06980 are separated by 7 nucleotides
MPMX19_06978: MPMX19_06978 - Alpha-keto acid-binding periplasmic protein TakP, at 258,544 to 259,629
_06978
MPMX19_06979: MPMX19_06979 - hypothetical protein, at 259,748 to 260,395
_06979
MPMX19_06980: MPMX19_06980 - hypothetical protein, at 260,403 to 262,355
_06980
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 258.835 kb on + strand, within MPMX19_06978 at 258.835 kb on + strand, within MPMX19_06978 at 258.835 kb on + strand, within MPMX19_06978 at 258.835 kb on + strand, within MPMX19_06978 at 258.835 kb on + strand, within MPMX19_06978 at 258.835 kb on + strand, within MPMX19_06978 at 258.835 kb on + strand, within MPMX19_06978 at 258.836 kb on - strand, within MPMX19_06978 at 258.836 kb on - strand, within MPMX19_06978 at 258.836 kb on - strand, within MPMX19_06978 at 258.836 kb on - strand, within MPMX19_06978 at 258.836 kb on - strand, within MPMX19_06978 at 258.836 kb on - strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.838 kb on + strand, within MPMX19_06978 at 258.839 kb on - strand, within MPMX19_06978 at 258.839 kb on - strand, within MPMX19_06978 at 258.839 kb on - strand, within MPMX19_06978 at 258.839 kb on - strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.841 kb on + strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.842 kb on - strand, within MPMX19_06978 at 258.922 kb on + strand, within MPMX19_06978 at 258.922 kb on + strand, within MPMX19_06978 at 258.922 kb on + strand, within MPMX19_06978 at 258.923 kb on - strand, within MPMX19_06978 at 258.958 kb on + strand, within MPMX19_06978 at 258.958 kb on + strand, within MPMX19_06978 at 258.958 kb on + strand, within MPMX19_06978 at 258.959 kb on - strand, within MPMX19_06978 at 258.959 kb on - strand, within MPMX19_06978 at 258.959 kb on - strand, within MPMX19_06978 at 259.144 kb on + strand, within MPMX19_06978 at 259.144 kb on + strand, within MPMX19_06978 at 259.145 kb on - strand, within MPMX19_06978 at 259.145 kb on - strand, within MPMX19_06978 at 259.195 kb on + strand, within MPMX19_06978 at 259.196 kb on - strand, within MPMX19_06978 at 259.196 kb on - strand, within MPMX19_06978 at 259.196 kb on - strand, within MPMX19_06978 at 259.196 kb on - strand, within MPMX19_06978 at 259.219 kb on + strand, within MPMX19_06978 at 259.219 kb on + strand, within MPMX19_06978 at 259.220 kb on - strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.237 kb on + strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.238 kb on - strand, within MPMX19_06978 at 259.240 kb on + strand, within MPMX19_06978 at 259.241 kb on - strand, within MPMX19_06978 at 259.241 kb on - strand, within MPMX19_06978 at 259.321 kb on + strand, within MPMX19_06978 at 259.379 kb on - strand, within MPMX19_06978 at 259.489 kb on + strand, within MPMX19_06978 at 259.489 kb on + strand, within MPMX19_06978 at 259.490 kb on - strand, within MPMX19_06978 at 259.490 kb on - strand, within MPMX19_06978 at 259.531 kb on + strand at 259.532 kb on - strand at 259.588 kb on + strand at 259.588 kb on + strand at 259.588 kb on + strand at 259.589 kb on - strand at 259.589 kb on - strand at 259.594 kb on + strand at 259.594 kb on + strand at 259.595 kb on - strand at 259.776 kb on + strand at 260.135 kb on + strand, within MPMX19_06979 at 260.135 kb on + strand, within MPMX19_06979 at 260.135 kb on + strand, within MPMX19_06979 at 260.135 kb on + strand, within MPMX19_06979 at 260.136 kb on - strand, within MPMX19_06979 at 260.136 kb on - strand, within MPMX19_06979 at 260.136 kb on - strand, within MPMX19_06979 at 260.393 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.493 kb on + strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.494 kb on - strand at 260.721 kb on + strand, within MPMX19_06980 at 260.721 kb on + strand, within MPMX19_06980 at 260.721 kb on + strand, within MPMX19_06980 at 260.721 kb on + strand, within MPMX19_06980 at 260.722 kb on - strand, within MPMX19_06980 at 260.722 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.863 kb on - strand, within MPMX19_06980 at 260.970 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.090 kb on + strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.091 kb on - strand, within MPMX19_06980 at 261.132 kb on + strand, within MPMX19_06980 at 261.132 kb on + strand, within MPMX19_06980 at 261.133 kb on - strand, within MPMX19_06980 at 261.133 kb on - strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.141 kb on + strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.142 kb on - strand, within MPMX19_06980 at 261.321 kb on + strand, within MPMX19_06980 at 261.322 kb on - strand, within MPMX19_06980 at 261.322 kb on - strand, within MPMX19_06980 at 261.322 kb on - strand, within MPMX19_06980
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 258,835 + MPMX19_06978 0.27 -1.1 258,835 + MPMX19_06978 0.27 +0.9 258,835 + MPMX19_06978 0.27 +0.7 258,835 + MPMX19_06978 0.27 -0.9 258,835 + MPMX19_06978 0.27 -0.4 258,835 + MPMX19_06978 0.27 -0.4 258,835 + MPMX19_06978 0.27 -0.4 258,836 - MPMX19_06978 0.27 +0.8 258,836 - MPMX19_06978 0.27 -1.2 258,836 - MPMX19_06978 0.27 -0.3 258,836 - MPMX19_06978 0.27 -1.5 258,836 - MPMX19_06978 0.27 -0.4 258,836 - MPMX19_06978 0.27 +0.4 258,838 + MPMX19_06978 0.27 -0.1 258,838 + MPMX19_06978 0.27 -0.3 258,838 + MPMX19_06978 0.27 -0.8 258,838 + MPMX19_06978 0.27 +0.5 258,838 + MPMX19_06978 0.27 +0.5 258,838 + MPMX19_06978 0.27 -1.1 258,838 + MPMX19_06978 0.27 +0.8 258,838 + MPMX19_06978 0.27 -0.1 258,839 - MPMX19_06978 0.27 +1.1 258,839 - MPMX19_06978 0.27 -2.0 258,839 - MPMX19_06978 0.27 -1.0 258,839 - MPMX19_06978 0.27 +0.3 258,841 + MPMX19_06978 0.27 +0.5 258,841 + MPMX19_06978 0.27 +0.5 258,841 + MPMX19_06978 0.27 +1.2 258,841 + MPMX19_06978 0.27 -2.1 258,841 + MPMX19_06978 0.27 +0.2 258,841 + MPMX19_06978 0.27 -0.3 258,841 + MPMX19_06978 0.27 -0.8 258,841 + MPMX19_06978 0.27 +0.2 258,841 + MPMX19_06978 0.27 -0.9 258,841 + MPMX19_06978 0.27 +0.8 258,841 + MPMX19_06978 0.27 -2.5 258,841 + MPMX19_06978 0.27 -0.4 258,841 + MPMX19_06978 0.27 -0.1 258,842 - MPMX19_06978 0.27 +2.1 258,842 - MPMX19_06978 0.27 -0.5 258,842 - MPMX19_06978 0.27 -0.2 258,842 - MPMX19_06978 0.27 +0.1 258,842 - MPMX19_06978 0.27 -0.1 258,842 - MPMX19_06978 0.27 -1.3 258,842 - MPMX19_06978 0.27 +0.0 258,842 - MPMX19_06978 0.27 +0.1 258,842 - MPMX19_06978 0.27 -0.1 258,842 - MPMX19_06978 0.27 -0.1 258,842 - MPMX19_06978 0.27 -1.0 258,842 - MPMX19_06978 0.27 -0.3 258,922 + MPMX19_06978 0.35 +0.6 258,922 + MPMX19_06978 0.35 -0.1 258,922 + MPMX19_06978 0.35 -1.2 258,923 - MPMX19_06978 0.35 +1.0 258,958 + MPMX19_06978 0.38 -0.6 258,958 + MPMX19_06978 0.38 -0.7 258,958 + MPMX19_06978 0.38 -0.8 258,959 - MPMX19_06978 0.38 -2.0 258,959 - MPMX19_06978 0.38 -1.7 258,959 - MPMX19_06978 0.38 -0.1 259,144 + MPMX19_06978 0.55 -1.8 259,144 + MPMX19_06978 0.55 -1.8 259,145 - MPMX19_06978 0.55 +0.1 259,145 - MPMX19_06978 0.55 -0.9 259,195 + MPMX19_06978 0.60 +1.2 259,196 - MPMX19_06978 0.60 +1.5 259,196 - MPMX19_06978 0.60 -0.6 259,196 - MPMX19_06978 0.60 -1.6 259,196 - MPMX19_06978 0.60 -1.5 259,219 + MPMX19_06978 0.62 -0.1 259,219 + MPMX19_06978 0.62 -0.0 259,220 - MPMX19_06978 0.62 -0.5 259,237 + MPMX19_06978 0.64 -0.8 259,237 + MPMX19_06978 0.64 -0.8 259,237 + MPMX19_06978 0.64 -0.5 259,237 + MPMX19_06978 0.64 +0.2 259,237 + MPMX19_06978 0.64 +0.8 259,237 + MPMX19_06978 0.64 -0.8 259,237 + MPMX19_06978 0.64 +1.5 259,237 + MPMX19_06978 0.64 +0.8 259,238 - MPMX19_06978 0.64 +0.0 259,238 - MPMX19_06978 0.64 -1.2 259,238 - MPMX19_06978 0.64 +0.2 259,238 - MPMX19_06978 0.64 +0.6 259,238 - MPMX19_06978 0.64 -0.6 259,238 - MPMX19_06978 0.64 -1.1 259,238 - MPMX19_06978 0.64 +0.4 259,238 - MPMX19_06978 0.64 -0.1 259,238 - MPMX19_06978 0.64 -1.5 259,238 - MPMX19_06978 0.64 -1.3 259,238 - MPMX19_06978 0.64 -1.7 259,238 - MPMX19_06978 0.64 -1.7 259,238 - MPMX19_06978 0.64 -0.7 259,238 - MPMX19_06978 0.64 -2.7 259,238 - MPMX19_06978 0.64 -0.5 259,238 - MPMX19_06978 0.64 +0.2 259,240 + MPMX19_06978 0.64 +1.2 259,241 - MPMX19_06978 0.64 +0.1 259,241 - MPMX19_06978 0.64 -0.5 259,321 + MPMX19_06978 0.72 +0.7 259,379 - MPMX19_06978 0.77 -2.0 259,489 + MPMX19_06978 0.87 +0.0 259,489 + MPMX19_06978 0.87 -0.4 259,490 - MPMX19_06978 0.87 +0.3 259,490 - MPMX19_06978 0.87 -0.3 259,531 + -1.6 259,532 - +1.3 259,588 + +0.2 259,588 + -0.1 259,588 + -0.1 259,589 - +0.5 259,589 - -0.3 259,594 + -0.7 259,594 + -0.1 259,595 - -0.9 259,776 + -0.8 260,135 + MPMX19_06979 0.60 -1.2 260,135 + MPMX19_06979 0.60 +0.3 260,135 + MPMX19_06979 0.60 +0.7 260,135 + MPMX19_06979 0.60 -1.8 260,136 - MPMX19_06979 0.60 +1.3 260,136 - MPMX19_06979 0.60 -0.4 260,136 - MPMX19_06979 0.60 +1.1 260,393 + -1.7 260,493 + +0.6 260,493 + +1.8 260,493 + -1.1 260,493 + +0.2 260,493 + +1.0 260,494 - -1.2 260,494 - -0.1 260,494 - +0.1 260,494 - -0.3 260,494 - +2.5 260,494 - +0.1 260,494 - -0.6 260,494 - -0.5 260,494 - -1.4 260,721 + MPMX19_06980 0.16 -1.0 260,721 + MPMX19_06980 0.16 +0.4 260,721 + MPMX19_06980 0.16 +1.5 260,721 + MPMX19_06980 0.16 -0.8 260,722 - MPMX19_06980 0.16 +0.6 260,722 - MPMX19_06980 0.16 +0.8 260,863 - MPMX19_06980 0.24 -0.8 260,863 - MPMX19_06980 0.24 -0.5 260,863 - MPMX19_06980 0.24 -0.9 260,863 - MPMX19_06980 0.24 -1.7 260,863 - MPMX19_06980 0.24 +1.0 260,970 + MPMX19_06980 0.29 -0.7 261,090 + MPMX19_06980 0.35 -1.6 261,090 + MPMX19_06980 0.35 +0.2 261,090 + MPMX19_06980 0.35 -3.3 261,090 + MPMX19_06980 0.35 +0.2 261,090 + MPMX19_06980 0.35 -0.2 261,090 + MPMX19_06980 0.35 -0.3 261,090 + MPMX19_06980 0.35 -0.9 261,090 + MPMX19_06980 0.35 -1.1 261,090 + MPMX19_06980 0.35 +0.0 261,090 + MPMX19_06980 0.35 +1.5 261,090 + MPMX19_06980 0.35 +0.0 261,090 + MPMX19_06980 0.35 -0.0 261,090 + MPMX19_06980 0.35 -0.8 261,090 + MPMX19_06980 0.35 -1.9 261,091 - MPMX19_06980 0.35 -0.0 261,091 - MPMX19_06980 0.35 +0.0 261,091 - MPMX19_06980 0.35 +0.3 261,091 - MPMX19_06980 0.35 +0.5 261,091 - MPMX19_06980 0.35 +0.6 261,091 - MPMX19_06980 0.35 +0.3 261,091 - MPMX19_06980 0.35 +0.1 261,091 - MPMX19_06980 0.35 +0.1 261,091 - MPMX19_06980 0.35 +0.2 261,091 - MPMX19_06980 0.35 -0.1 261,091 - MPMX19_06980 0.35 -0.1 261,091 - MPMX19_06980 0.35 +0.1 261,091 - MPMX19_06980 0.35 +0.3 261,091 - MPMX19_06980 0.35 -0.2 261,132 + MPMX19_06980 0.37 +0.3 261,132 + MPMX19_06980 0.37 +0.7 261,133 - MPMX19_06980 0.37 -1.1 261,133 - MPMX19_06980 0.37 -1.1 261,141 + MPMX19_06980 0.38 +0.5 261,141 + MPMX19_06980 0.38 +0.3 261,141 + MPMX19_06980 0.38 +1.4 261,141 + MPMX19_06980 0.38 -0.4 261,141 + MPMX19_06980 0.38 -1.2 261,141 + MPMX19_06980 0.38 -1.5 261,141 + MPMX19_06980 0.38 -1.1 261,142 - MPMX19_06980 0.38 -0.1 261,142 - MPMX19_06980 0.38 -2.1 261,142 - MPMX19_06980 0.38 -0.8 261,142 - MPMX19_06980 0.38 +0.2 261,142 - MPMX19_06980 0.38 +0.3 261,142 - MPMX19_06980 0.38 -0.8 261,321 + MPMX19_06980 0.47 -0.2 261,322 - MPMX19_06980 0.47 -0.2 261,322 - MPMX19_06980 0.47 +0.1 261,322 - MPMX19_06980 0.47 -0.5
Or see this region's nucleotide sequence