Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06952 and MPMX19_06953 are separated by 16 nucleotides MPMX19_06953 and MPMX19_06954 are separated by 65 nucleotides MPMX19_06954 and MPMX19_06955 are separated by 3 nucleotides MPMX19_06955 and MPMX19_06956 are separated by 18 nucleotides
MPMX19_06952: MPMX19_06952 - Electron transfer flavoprotein subunit alpha, at 228,701 to 229,636
_06952
MPMX19_06953: MPMX19_06953 - Electron transfer flavoprotein subunit beta, at 229,653 to 230,402
_06953
MPMX19_06954: MPMX19_06954 - hypothetical protein, at 230,468 to 231,445
_06954
MPMX19_06955: MPMX19_06955 - High-affinity branched-chain amino acid transport system permease protein LivH, at 231,449 to 232,336
_06955
MPMX19_06956: MPMX19_06956 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 232,355 to 233,077
_06956
Position (kb) 230
231
232 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 229.534 kb on + strand, within MPMX19_06952 at 230.409 kb on + strand at 230.409 kb on + strand at 230.409 kb on + strand at 230.410 kb on - strand at 230.410 kb on - strand at 230.416 kb on + strand at 230.416 kb on + strand at 230.416 kb on + strand at 230.417 kb on - strand at 230.417 kb on - strand at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 230.596 kb on - strand, within MPMX19_06954 at 231.337 kb on - strand, within MPMX19_06954 at 231.337 kb on - strand, within MPMX19_06954 at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.399 kb on + strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.400 kb on - strand at 231.409 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.450 kb on + strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.451 kb on - strand at 231.482 kb on + strand at 231.482 kb on + strand at 231.483 kb on - strand at 231.483 kb on - strand at 231.537 kb on + strand at 231.538 kb on - strand, within MPMX19_06955 at 231.538 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.733 kb on - strand, within MPMX19_06955 at 231.892 kb on - strand, within MPMX19_06955 at 231.892 kb on - strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.903 kb on + strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.904 kb on - strand, within MPMX19_06955 at 231.952 kb on - strand, within MPMX19_06955 at 231.972 kb on + strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 231.973 kb on - strand, within MPMX19_06955 at 232.032 kb on + strand, within MPMX19_06955 at 232.032 kb on + strand, within MPMX19_06955 at 232.033 kb on - strand, within MPMX19_06955 at 232.033 kb on - strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.050 kb on + strand, within MPMX19_06955 at 232.051 kb on - strand, within MPMX19_06955 at 232.051 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.147 kb on - strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.185 kb on + strand, within MPMX19_06955 at 232.260 kb on + strand at 232.260 kb on + strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand at 232.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 229,534 + MPMX19_06952 0.89 +1.2 230,409 + -1.0 230,409 + -1.1 230,409 + +1.2 230,410 - +0.1 230,410 - -1.2 230,416 + -2.0 230,416 + +0.5 230,416 + -2.2 230,417 - -0.3 230,417 - -2.7 230,596 - MPMX19_06954 0.13 -1.5 230,596 - MPMX19_06954 0.13 +0.3 230,596 - MPMX19_06954 0.13 -0.8 230,596 - MPMX19_06954 0.13 -1.5 230,596 - MPMX19_06954 0.13 -0.8 231,337 - MPMX19_06954 0.89 -2.2 231,337 - MPMX19_06954 0.89 -0.3 231,399 + -0.7 231,399 + +0.8 231,399 + -1.5 231,399 + -1.5 231,399 + -0.8 231,399 + -1.8 231,399 + -0.2 231,399 + -0.3 231,399 + +0.9 231,399 + -0.5 231,400 - -2.4 231,400 - +0.4 231,400 - +0.3 231,400 - +1.1 231,400 - +0.6 231,400 - -0.2 231,400 - -0.8 231,400 - -0.0 231,400 - -1.0 231,400 - -0.9 231,400 - -0.4 231,409 + +0.1 231,450 + -0.7 231,450 + -0.8 231,450 + -1.1 231,450 + +0.2 231,451 - +1.1 231,451 - +0.8 231,451 - -0.5 231,451 - +0.5 231,482 + -1.9 231,482 + -0.5 231,483 - +0.8 231,483 - -0.1 231,537 + +0.3 231,538 - MPMX19_06955 0.10 +1.5 231,538 - MPMX19_06955 0.10 -1.3 231,733 - MPMX19_06955 0.32 -1.3 231,733 - MPMX19_06955 0.32 +0.4 231,733 - MPMX19_06955 0.32 +0.6 231,892 - MPMX19_06955 0.50 -0.2 231,892 - MPMX19_06955 0.50 -2.2 231,903 + MPMX19_06955 0.51 +0.5 231,903 + MPMX19_06955 0.51 -0.8 231,903 + MPMX19_06955 0.51 -1.8 231,903 + MPMX19_06955 0.51 -2.8 231,904 - MPMX19_06955 0.51 -1.1 231,904 - MPMX19_06955 0.51 -1.0 231,904 - MPMX19_06955 0.51 +1.2 231,904 - MPMX19_06955 0.51 +0.2 231,952 - MPMX19_06955 0.57 -0.4 231,972 + MPMX19_06955 0.59 +0.0 231,973 - MPMX19_06955 0.59 +0.2 231,973 - MPMX19_06955 0.59 -0.2 231,973 - MPMX19_06955 0.59 -0.8 232,032 + MPMX19_06955 0.66 -1.8 232,032 + MPMX19_06955 0.66 -0.4 232,033 - MPMX19_06955 0.66 +2.1 232,033 - MPMX19_06955 0.66 +0.2 232,050 + MPMX19_06955 0.68 +1.0 232,050 + MPMX19_06955 0.68 -0.3 232,050 + MPMX19_06955 0.68 +0.9 232,051 - MPMX19_06955 0.68 -0.2 232,051 - MPMX19_06955 0.68 -1.4 232,147 - MPMX19_06955 0.79 -0.8 232,147 - MPMX19_06955 0.79 -0.5 232,147 - MPMX19_06955 0.79 +0.2 232,147 - MPMX19_06955 0.79 +0.5 232,147 - MPMX19_06955 0.79 -2.3 232,185 + MPMX19_06955 0.83 +0.5 232,185 + MPMX19_06955 0.83 +0.9 232,185 + MPMX19_06955 0.83 +0.3 232,185 + MPMX19_06955 0.83 -0.3 232,185 + MPMX19_06955 0.83 -0.6 232,185 + MPMX19_06955 0.83 +0.2 232,185 + MPMX19_06955 0.83 -1.7 232,185 + MPMX19_06955 0.83 -0.0 232,185 + MPMX19_06955 0.83 -0.9 232,185 + MPMX19_06955 0.83 -2.1 232,185 + MPMX19_06955 0.83 -0.4 232,185 + MPMX19_06955 0.83 -0.8 232,260 + +1.0 232,260 + -0.2 232,369 - +0.9 232,369 - -0.8 232,369 - -0.2 232,369 - -1.3 232,369 - +0.7 232,369 - -0.9 232,369 - -0.1
Or see this region's nucleotide sequence