Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06428 and MPMX19_06429 are separated by 103 nucleotides MPMX19_06429 and MPMX19_06430 are separated by 10 nucleotides
MPMX19_06428: MPMX19_06428 - hypothetical protein, at 200,794 to 201,204
_06428
MPMX19_06429: MPMX19_06429 - HTH-type transcriptional regulator HmrR, at 201,308 to 201,751
_06429
MPMX19_06430: MPMX19_06430 - Copper-exporting P-type ATPase, at 201,762 to 204,200
_06430
Position (kb) 201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 200.574 kb on - strand at 200.795 kb on + strand at 200.796 kb on - strand at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.246 kb on + strand at 201.246 kb on + strand at 201.246 kb on + strand at 201.256 kb on + strand at 201.256 kb on + strand at 201.257 kb on - strand at 201.257 kb on - strand at 201.637 kb on - strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.693 kb on + strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.694 kb on - strand, within MPMX19_06429 at 201.696 kb on + strand, within MPMX19_06429 at 201.697 kb on - strand, within MPMX19_06429 at 201.730 kb on + strand at 201.730 kb on + strand at 201.730 kb on + strand at 201.730 kb on + strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.731 kb on - strand at 201.794 kb on + strand at 201.794 kb on + strand at 201.795 kb on - strand at 201.795 kb on - strand at 201.862 kb on + strand at 201.898 kb on + strand at 201.898 kb on + strand at 201.937 kb on + strand at 201.937 kb on + strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.938 kb on - strand at 201.983 kb on + strand at 201.983 kb on + strand at 202.550 kb on + strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.551 kb on - strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.596 kb on + strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430 at 202.597 kb on - strand, within MPMX19_06430
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 200,574 - -0.4 200,795 + -0.5 200,796 - -1.9 201,027 + MPMX19_06428 0.57 +3.0 201,027 + MPMX19_06428 0.57 +0.3 201,027 + MPMX19_06428 0.57 -0.1 201,027 + MPMX19_06428 0.57 -0.7 201,027 + MPMX19_06428 0.57 -0.3 201,027 + MPMX19_06428 0.57 -1.8 201,027 + MPMX19_06428 0.57 -0.8 201,027 + MPMX19_06428 0.57 -1.1 201,027 + MPMX19_06428 0.57 -1.8 201,027 + MPMX19_06428 0.57 -0.6 201,027 + MPMX19_06428 0.57 +0.1 201,027 + MPMX19_06428 0.57 -0.0 201,027 + MPMX19_06428 0.57 -1.4 201,028 - MPMX19_06428 0.57 +0.1 201,028 - MPMX19_06428 0.57 +0.5 201,028 - MPMX19_06428 0.57 -0.0 201,028 - MPMX19_06428 0.57 -0.3 201,028 - MPMX19_06428 0.57 -1.5 201,047 + MPMX19_06428 0.62 -0.4 201,047 + MPMX19_06428 0.62 +1.1 201,047 + MPMX19_06428 0.62 +0.3 201,047 + MPMX19_06428 0.62 -2.0 201,048 - MPMX19_06428 0.62 -0.5 201,048 - MPMX19_06428 0.62 -0.6 201,048 - MPMX19_06428 0.62 -0.3 201,048 - MPMX19_06428 0.62 -0.5 201,048 - MPMX19_06428 0.62 -1.4 201,246 + +0.1 201,246 + -0.9 201,246 + -2.9 201,256 + +0.6 201,256 + -1.1 201,257 - +1.7 201,257 - -0.8 201,637 - MPMX19_06429 0.74 +0.3 201,693 + MPMX19_06429 0.87 -0.3 201,693 + MPMX19_06429 0.87 -1.5 201,693 + MPMX19_06429 0.87 -0.6 201,693 + MPMX19_06429 0.87 -1.9 201,693 + MPMX19_06429 0.87 -1.4 201,693 + MPMX19_06429 0.87 +0.7 201,693 + MPMX19_06429 0.87 +0.5 201,693 + MPMX19_06429 0.87 -1.3 201,694 - MPMX19_06429 0.87 -0.8 201,694 - MPMX19_06429 0.87 -1.1 201,694 - MPMX19_06429 0.87 -2.0 201,694 - MPMX19_06429 0.87 -1.1 201,696 + MPMX19_06429 0.87 -0.4 201,697 - MPMX19_06429 0.88 -0.8 201,730 + -0.4 201,730 + -0.3 201,730 + -1.5 201,730 + +0.6 201,731 - -1.1 201,731 - -0.1 201,731 - -1.1 201,731 - +0.9 201,731 - -2.7 201,731 - -0.9 201,731 - +0.1 201,794 + -1.9 201,794 + -0.5 201,795 - -1.2 201,795 - -0.4 201,862 + -0.3 201,898 + -1.6 201,898 + -0.1 201,937 + +0.8 201,937 + -0.8 201,938 - -0.7 201,938 - +0.5 201,938 - +1.1 201,938 - -0.2 201,938 - +0.4 201,983 + -0.0 201,983 + -0.9 202,550 + MPMX19_06430 0.32 -1.5 202,551 - MPMX19_06430 0.32 +0.5 202,551 - MPMX19_06430 0.32 -0.4 202,551 - MPMX19_06430 0.32 -0.9 202,551 - MPMX19_06430 0.32 -0.5 202,551 - MPMX19_06430 0.32 +0.3 202,551 - MPMX19_06430 0.32 -0.1 202,596 + MPMX19_06430 0.34 -1.5 202,596 + MPMX19_06430 0.34 +0.4 202,596 + MPMX19_06430 0.34 -1.1 202,596 + MPMX19_06430 0.34 -2.3 202,597 - MPMX19_06430 0.34 +0.6 202,597 - MPMX19_06430 0.34 +0.3 202,597 - MPMX19_06430 0.34 +0.3 202,597 - MPMX19_06430 0.34 +0.1 202,597 - MPMX19_06430 0.34 -0.9
Or see this region's nucleotide sequence