Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06426 and MPMX19_06427 are separated by 134 nucleotides MPMX19_06427 and MPMX19_06428 are separated by 544 nucleotides
MPMX19_06426: MPMX19_06426 - hypothetical protein, at 198,784 to 199,110
_06426
MPMX19_06427: MPMX19_06427 - hypothetical protein, at 199,245 to 200,249
_06427
MPMX19_06428: MPMX19_06428 - hypothetical protein, at 200,794 to 201,204
_06428
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 198.304 kb on + strand at 198.305 kb on - strand at 198.305 kb on - strand at 198.436 kb on + strand at 198.436 kb on + strand at 198.436 kb on + strand at 198.437 kb on - strand at 198.737 kb on + strand at 198.737 kb on + strand at 198.738 kb on - strand at 198.738 kb on - strand at 198.759 kb on + strand at 198.760 kb on - strand at 199.009 kb on - strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.038 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.075 kb on + strand, within MPMX19_06426 at 199.076 kb on - strand, within MPMX19_06426 at 199.076 kb on - strand, within MPMX19_06426 at 199.309 kb on + strand at 199.309 kb on + strand at 199.309 kb on + strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.310 kb on - strand at 199.489 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.491 kb on + strand, within MPMX19_06427 at 199.492 kb on - strand, within MPMX19_06427 at 199.492 kb on - strand, within MPMX19_06427 at 199.594 kb on + strand, within MPMX19_06427 at 199.594 kb on + strand, within MPMX19_06427 at 199.594 kb on + strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.595 kb on - strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.601 kb on + strand, within MPMX19_06427 at 199.602 kb on - strand, within MPMX19_06427 at 199.602 kb on - strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.724 kb on + strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.725 kb on - strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.838 kb on + strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.839 kb on - strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.858 kb on + strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 199.859 kb on - strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.043 kb on + strand, within MPMX19_06427 at 200.044 kb on - strand, within MPMX19_06427 at 200.044 kb on - strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.094 kb on + strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.095 kb on - strand, within MPMX19_06427 at 200.177 kb on - strand at 200.247 kb on + strand at 200.248 kb on - strand at 200.248 kb on - strand at 200.574 kb on - strand at 200.795 kb on + strand at 200.796 kb on - strand at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.027 kb on + strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.028 kb on - strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.047 kb on + strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.048 kb on - strand, within MPMX19_06428 at 201.246 kb on + strand at 201.246 kb on + strand at 201.246 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 198,304 + +0.6 198,305 - -0.3 198,305 - +0.9 198,436 + +0.7 198,436 + -2.1 198,436 + -0.8 198,437 - -1.3 198,737 + +0.4 198,737 + +0.3 198,738 - +2.1 198,738 - -0.1 198,759 + +0.8 198,760 - -0.3 199,009 - MPMX19_06426 0.69 -0.4 199,038 + MPMX19_06426 0.78 -1.1 199,038 + MPMX19_06426 0.78 +0.7 199,038 + MPMX19_06426 0.78 +0.1 199,038 + MPMX19_06426 0.78 -1.1 199,075 + MPMX19_06426 0.89 -1.5 199,075 + MPMX19_06426 0.89 -0.8 199,075 + MPMX19_06426 0.89 -1.1 199,075 + MPMX19_06426 0.89 -0.4 199,075 + MPMX19_06426 0.89 -3.2 199,076 - MPMX19_06426 0.89 -0.9 199,076 - MPMX19_06426 0.89 +0.0 199,309 + -1.5 199,309 + +0.2 199,309 + -1.3 199,310 - +0.2 199,310 - -2.8 199,310 - -0.5 199,310 - -1.3 199,310 - -1.9 199,310 - -0.9 199,310 - +0.7 199,310 - -0.5 199,489 + MPMX19_06427 0.24 +0.5 199,491 + MPMX19_06427 0.24 -0.6 199,491 + MPMX19_06427 0.24 +0.2 199,491 + MPMX19_06427 0.24 +0.2 199,491 + MPMX19_06427 0.24 +0.2 199,492 - MPMX19_06427 0.25 -0.3 199,492 - MPMX19_06427 0.25 -0.1 199,594 + MPMX19_06427 0.35 +1.2 199,594 + MPMX19_06427 0.35 -0.6 199,594 + MPMX19_06427 0.35 +0.1 199,595 - MPMX19_06427 0.35 -0.3 199,595 - MPMX19_06427 0.35 -0.8 199,595 - MPMX19_06427 0.35 -0.1 199,595 - MPMX19_06427 0.35 -0.6 199,601 + MPMX19_06427 0.35 -0.3 199,601 + MPMX19_06427 0.35 -1.3 199,601 + MPMX19_06427 0.35 -0.5 199,601 + MPMX19_06427 0.35 +2.6 199,601 + MPMX19_06427 0.35 -0.1 199,602 - MPMX19_06427 0.36 +0.5 199,602 - MPMX19_06427 0.36 -0.1 199,724 + MPMX19_06427 0.48 -0.0 199,724 + MPMX19_06427 0.48 +0.6 199,724 + MPMX19_06427 0.48 +0.4 199,724 + MPMX19_06427 0.48 +2.3 199,725 - MPMX19_06427 0.48 -0.5 199,725 - MPMX19_06427 0.48 +0.4 199,725 - MPMX19_06427 0.48 +0.2 199,725 - MPMX19_06427 0.48 -0.5 199,725 - MPMX19_06427 0.48 +0.3 199,725 - MPMX19_06427 0.48 -0.5 199,725 - MPMX19_06427 0.48 +0.5 199,838 + MPMX19_06427 0.59 -0.6 199,838 + MPMX19_06427 0.59 -0.2 199,838 + MPMX19_06427 0.59 +0.6 199,838 + MPMX19_06427 0.59 +0.6 199,838 + MPMX19_06427 0.59 -0.7 199,838 + MPMX19_06427 0.59 -0.1 199,838 + MPMX19_06427 0.59 +0.1 199,839 - MPMX19_06427 0.59 +0.1 199,839 - MPMX19_06427 0.59 -1.5 199,839 - MPMX19_06427 0.59 +2.3 199,839 - MPMX19_06427 0.59 -0.8 199,839 - MPMX19_06427 0.59 +0.2 199,839 - MPMX19_06427 0.59 +0.1 199,839 - MPMX19_06427 0.59 -1.5 199,839 - MPMX19_06427 0.59 -1.9 199,839 - MPMX19_06427 0.59 -0.8 199,858 + MPMX19_06427 0.61 -1.0 199,858 + MPMX19_06427 0.61 +1.3 199,858 + MPMX19_06427 0.61 -1.5 199,859 - MPMX19_06427 0.61 -1.9 199,859 - MPMX19_06427 0.61 +0.7 199,859 - MPMX19_06427 0.61 -0.0 199,859 - MPMX19_06427 0.61 -0.8 199,859 - MPMX19_06427 0.61 +0.2 200,043 + MPMX19_06427 0.79 -1.3 200,043 + MPMX19_06427 0.79 -1.3 200,043 + MPMX19_06427 0.79 -0.5 200,043 + MPMX19_06427 0.79 +0.9 200,043 + MPMX19_06427 0.79 -2.6 200,043 + MPMX19_06427 0.79 -3.1 200,044 - MPMX19_06427 0.80 +0.2 200,044 - MPMX19_06427 0.80 +0.7 200,094 + MPMX19_06427 0.84 +2.3 200,094 + MPMX19_06427 0.84 -2.2 200,094 + MPMX19_06427 0.84 -0.3 200,094 + MPMX19_06427 0.84 +1.1 200,094 + MPMX19_06427 0.84 -0.1 200,094 + MPMX19_06427 0.84 -1.0 200,095 - MPMX19_06427 0.85 -0.2 200,095 - MPMX19_06427 0.85 +0.5 200,095 - MPMX19_06427 0.85 -1.5 200,177 - -0.3 200,247 + -0.2 200,248 - -0.9 200,248 - +0.3 200,574 - -0.4 200,795 + -0.5 200,796 - -1.9 201,027 + MPMX19_06428 0.57 +3.0 201,027 + MPMX19_06428 0.57 +0.3 201,027 + MPMX19_06428 0.57 -0.1 201,027 + MPMX19_06428 0.57 -0.7 201,027 + MPMX19_06428 0.57 -0.3 201,027 + MPMX19_06428 0.57 -1.8 201,027 + MPMX19_06428 0.57 -0.8 201,027 + MPMX19_06428 0.57 -1.1 201,027 + MPMX19_06428 0.57 -1.8 201,027 + MPMX19_06428 0.57 -0.6 201,027 + MPMX19_06428 0.57 +0.1 201,027 + MPMX19_06428 0.57 -0.0 201,027 + MPMX19_06428 0.57 -1.4 201,028 - MPMX19_06428 0.57 +0.1 201,028 - MPMX19_06428 0.57 +0.5 201,028 - MPMX19_06428 0.57 -0.0 201,028 - MPMX19_06428 0.57 -0.3 201,028 - MPMX19_06428 0.57 -1.5 201,047 + MPMX19_06428 0.62 -0.4 201,047 + MPMX19_06428 0.62 +1.1 201,047 + MPMX19_06428 0.62 +0.3 201,047 + MPMX19_06428 0.62 -2.0 201,048 - MPMX19_06428 0.62 -0.5 201,048 - MPMX19_06428 0.62 -0.6 201,048 - MPMX19_06428 0.62 -0.3 201,048 - MPMX19_06428 0.62 -0.5 201,048 - MPMX19_06428 0.62 -1.4 201,246 + +0.1 201,246 + -0.9 201,246 + -2.9
Or see this region's nucleotide sequence