Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06295 and MPMX19_06296 are separated by 95 nucleotides MPMX19_06296 and MPMX19_06297 are separated by 236 nucleotides MPMX19_06297 and MPMX19_06298 are separated by 75 nucleotides MPMX19_06298 and MPMX19_06299 are separated by 210 nucleotides MPMX19_06299 and MPMX19_06300 are separated by 94 nucleotides
MPMX19_06295: MPMX19_06295 - Sensor kinase CckA, at 62,511 to 63,623
_06295
MPMX19_06296: MPMX19_06296 - hypothetical protein, at 63,719 to 63,970
_06296
MPMX19_06297: MPMX19_06297 - hypothetical protein, at 64,207 to 64,494
_06297
MPMX19_06298: MPMX19_06298 - hypothetical protein, at 64,570 to 64,869
_06298
MPMX19_06299: MPMX19_06299 - hypothetical protein, at 65,080 to 65,271
_06299
MPMX19_06300: MPMX19_06300 - hypothetical protein, at 65,366 to 66,292
_06300
Position (kb) 64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.432 kb on + strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.433 kb on - strand, within MPMX19_06295 at 63.519 kb on + strand at 63.519 kb on + strand at 63.521 kb on + strand at 63.522 kb on - strand at 63.522 kb on - strand at 63.522 kb on - strand at 63.652 kb on + strand at 63.671 kb on - strand at 64.000 kb on + strand at 64.001 kb on - strand at 64.001 kb on - strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.002 kb on + strand at 64.003 kb on - strand at 64.003 kb on - strand at 64.034 kb on - strand at 64.034 kb on - strand at 64.043 kb on + strand at 64.044 kb on - strand at 64.091 kb on - strand at 64.095 kb on + strand at 64.096 kb on - strand at 64.421 kb on + strand, within MPMX19_06297 at 64.422 kb on - strand, within MPMX19_06297 at 64.489 kb on - strand at 64.525 kb on + strand at 64.526 kb on - strand at 64.609 kb on - strand, within MPMX19_06298 at 64.632 kb on + strand, within MPMX19_06298 at 64.632 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.766 kb on + strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.767 kb on - strand, within MPMX19_06298 at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.929 kb on + strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 64.930 kb on - strand at 65.101 kb on + strand, within MPMX19_06299 at 65.129 kb on + strand, within MPMX19_06299 at 65.129 kb on + strand, within MPMX19_06299 at 65.130 kb on - strand, within MPMX19_06299 at 65.130 kb on - strand, within MPMX19_06299 at 65.130 kb on - strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.240 kb on + strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299 at 65.241 kb on - strand, within MPMX19_06299
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 63,432 + MPMX19_06295 0.83 -1.8 63,432 + MPMX19_06295 0.83 -0.0 63,432 + MPMX19_06295 0.83 -0.3 63,432 + MPMX19_06295 0.83 -2.8 63,432 + MPMX19_06295 0.83 -2.2 63,432 + MPMX19_06295 0.83 -1.6 63,433 - MPMX19_06295 0.83 +2.3 63,433 - MPMX19_06295 0.83 -1.0 63,433 - MPMX19_06295 0.83 -0.3 63,433 - MPMX19_06295 0.83 -0.5 63,433 - MPMX19_06295 0.83 +0.8 63,433 - MPMX19_06295 0.83 -1.2 63,519 + -0.6 63,519 + -0.5 63,521 + -0.3 63,522 - -0.9 63,522 - -1.6 63,522 - -0.7 63,652 + -1.6 63,671 - -1.8 64,000 + -0.1 64,001 - +0.3 64,001 - -1.5 64,002 + -1.2 64,002 + +1.7 64,002 + -1.0 64,002 + -0.2 64,003 - -0.3 64,003 - -0.2 64,034 - -1.1 64,034 - -0.4 64,043 + +0.5 64,044 - -0.9 64,091 - -0.7 64,095 + -0.9 64,096 - -1.5 64,421 + MPMX19_06297 0.74 -1.3 64,422 - MPMX19_06297 0.75 -0.6 64,489 - -1.5 64,525 + -0.6 64,526 - +1.1 64,609 - MPMX19_06298 0.13 -1.2 64,632 + MPMX19_06298 0.21 +0.1 64,632 + MPMX19_06298 0.21 -0.9 64,766 + MPMX19_06298 0.65 -0.7 64,766 + MPMX19_06298 0.65 +0.3 64,766 + MPMX19_06298 0.65 +0.3 64,766 + MPMX19_06298 0.65 -0.3 64,766 + MPMX19_06298 0.65 -0.5 64,766 + MPMX19_06298 0.65 -0.3 64,766 + MPMX19_06298 0.65 -3.1 64,766 + MPMX19_06298 0.65 -0.3 64,766 + MPMX19_06298 0.65 -0.1 64,766 + MPMX19_06298 0.65 +1.5 64,766 + MPMX19_06298 0.65 +1.1 64,766 + MPMX19_06298 0.65 -0.8 64,766 + MPMX19_06298 0.65 +1.3 64,767 - MPMX19_06298 0.66 -0.3 64,767 - MPMX19_06298 0.66 -0.3 64,767 - MPMX19_06298 0.66 -0.5 64,767 - MPMX19_06298 0.66 -1.1 64,767 - MPMX19_06298 0.66 -0.4 64,767 - MPMX19_06298 0.66 -1.3 64,767 - MPMX19_06298 0.66 -0.5 64,767 - MPMX19_06298 0.66 +0.2 64,767 - MPMX19_06298 0.66 -1.9 64,767 - MPMX19_06298 0.66 -0.6 64,767 - MPMX19_06298 0.66 -3.1 64,767 - MPMX19_06298 0.66 +0.3 64,929 + +0.3 64,929 + -1.1 64,929 + -1.0 64,929 + -0.4 64,929 + -1.9 64,929 + -1.2 64,929 + -0.6 64,929 + +0.7 64,929 + -0.5 64,929 + -0.3 64,929 + -0.1 64,929 + +0.5 64,929 + +0.5 64,929 + -2.8 64,929 + -0.7 64,929 + +0.0 64,930 - -0.8 64,930 - +1.1 64,930 - +0.5 64,930 - -0.4 64,930 - +0.2 64,930 - -0.4 64,930 - -0.5 64,930 - -0.6 64,930 - +0.6 64,930 - -1.8 64,930 - -0.3 64,930 - -0.7 64,930 - -0.5 64,930 - +0.1 65,101 + MPMX19_06299 0.11 +0.1 65,129 + MPMX19_06299 0.26 +0.9 65,129 + MPMX19_06299 0.26 -0.6 65,130 - MPMX19_06299 0.26 -0.7 65,130 - MPMX19_06299 0.26 -0.5 65,130 - MPMX19_06299 0.26 -0.8 65,240 + MPMX19_06299 0.83 +0.1 65,240 + MPMX19_06299 0.83 +0.0 65,240 + MPMX19_06299 0.83 -0.0 65,240 + MPMX19_06299 0.83 +0.3 65,240 + MPMX19_06299 0.83 +0.8 65,240 + MPMX19_06299 0.83 +0.3 65,240 + MPMX19_06299 0.83 +1.1 65,240 + MPMX19_06299 0.83 +0.2 65,241 - MPMX19_06299 0.84 -1.6 65,241 - MPMX19_06299 0.84 +1.1 65,241 - MPMX19_06299 0.84 +0.1 65,241 - MPMX19_06299 0.84 +0.6 65,241 - MPMX19_06299 0.84 -0.2 65,241 - MPMX19_06299 0.84 -2.2
Or see this region's nucleotide sequence