Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06089 and MPMX19_06090 are separated by 174 nucleotides MPMX19_06090 and MPMX19_06091 are separated by 478 nucleotides
MPMX19_06089: MPMX19_06089 - Regulatory protein LuxO, at 267,211 to 268,653
_06089
MPMX19_06090: MPMX19_06090 - Pyruvate dehydrogenase complex repressor, at 268,828 to 269,598
_06090
MPMX19_06091: MPMX19_06091 - Glycolate permease GlcA, at 270,077 to 271,753
_06091
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.164 kb on - strand, within MPMX19_06089 at 268.232 kb on + strand, within MPMX19_06089 at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.590 kb on + strand at 268.591 kb on - strand at 268.591 kb on - strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.727 kb on - strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 269.060 kb on + strand, within MPMX19_06090 at 269.135 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.854 kb on + strand at 269.854 kb on + strand at 269.855 kb on - strand at 269.855 kb on - strand at 269.855 kb on - strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.900 kb on + strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 269.901 kb on - strand at 270.095 kb on + strand at 270.095 kb on + strand at 270.096 kb on - strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.181 kb on + strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.182 kb on - strand at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.296 kb on + strand, within MPMX19_06091 at 270.297 kb on - strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.344 kb on + strand, within MPMX19_06091 at 270.345 kb on - strand, within MPMX19_06091 at 270.345 kb on - strand, within MPMX19_06091
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 268,163 + MPMX19_06089 0.66 -0.9 268,163 + MPMX19_06089 0.66 -0.1 268,163 + MPMX19_06089 0.66 -1.7 268,163 + MPMX19_06089 0.66 -1.5 268,164 - MPMX19_06089 0.66 +0.4 268,232 + MPMX19_06089 0.71 -1.2 268,568 + -0.2 268,568 + -1.4 268,568 + +0.1 268,568 + -0.0 268,568 + -2.6 268,568 + +0.1 268,568 + -2.9 268,568 + -0.1 268,568 + -0.6 268,569 - +0.2 268,569 - -2.0 268,569 - -0.4 268,569 - -0.2 268,569 - +0.0 268,569 - -0.6 268,569 - +0.6 268,569 - -1.0 268,569 - -0.3 268,569 - -1.9 268,590 + +0.0 268,591 - -0.6 268,591 - +0.6 268,726 + +0.2 268,726 + +2.4 268,726 + +0.2 268,726 + -0.7 268,726 + -1.2 268,726 + -1.3 268,726 + -1.3 268,727 - -0.4 268,772 + -0.2 268,772 + -1.8 268,772 + +0.6 268,772 + +0.0 268,772 + +0.3 268,772 + -0.9 268,772 + -0.3 268,772 + +0.3 268,772 + -0.9 268,772 + +0.1 268,772 + -1.2 268,772 + -1.0 268,772 + +0.4 268,772 + -1.6 268,772 + -1.4 268,772 + -2.1 268,772 + -0.9 268,772 + -1.6 268,772 + +0.3 268,773 - -1.9 268,773 - -1.2 268,773 - -0.6 268,773 - -1.7 268,773 - -1.0 268,773 - +0.1 268,773 - +0.9 268,773 - -1.0 268,773 - -0.1 268,773 - +0.8 268,773 - -0.7 268,773 - -0.4 268,773 - -0.6 268,773 - -1.0 268,773 - -1.0 268,775 + -0.6 268,775 + +1.1 268,775 + +1.6 268,775 + -0.7 268,775 + -0.9 268,775 + +1.4 268,775 + +0.0 268,775 + -1.5 268,775 + +0.3 268,775 + -0.7 268,775 + -2.1 268,775 + +0.3 268,775 + +0.1 268,775 + +0.2 268,775 + +1.0 268,776 - -0.7 268,776 - -0.6 268,776 - -1.4 268,776 - -0.0 268,776 - -0.1 268,776 - -2.6 268,776 - -1.3 268,776 - -0.4 268,776 - -1.1 268,776 - -0.6 268,776 - -0.7 268,776 - +0.1 268,776 - -1.0 268,776 - -1.2 268,776 - -0.3 268,776 - +0.1 268,776 - +1.2 268,776 - +0.0 269,060 + MPMX19_06090 0.30 -0.6 269,135 + MPMX19_06090 0.40 -1.4 269,287 + MPMX19_06090 0.60 -1.6 269,287 + MPMX19_06090 0.60 -0.9 269,310 - MPMX19_06090 0.63 -0.7 269,310 - MPMX19_06090 0.63 -0.3 269,642 - -2.4 269,642 - -2.0 269,642 - +1.0 269,642 - +0.9 269,642 - -1.5 269,642 - -0.3 269,854 + -0.4 269,854 + +0.4 269,855 - -2.0 269,855 - -0.1 269,855 - -0.1 269,900 + -0.8 269,900 + -1.9 269,900 + -1.1 269,900 + +0.5 269,901 - -1.3 269,901 - +0.5 269,901 - -0.7 269,901 - +0.3 269,901 - +0.7 269,901 - -1.0 269,901 - -1.1 270,095 + +0.6 270,095 + +0.8 270,096 - +0.1 270,181 + +0.2 270,181 + -1.0 270,181 + +0.8 270,181 + -0.7 270,182 - -0.4 270,182 - -0.1 270,182 - -0.0 270,182 - +0.1 270,182 - -0.2 270,182 - +0.3 270,182 - -0.4 270,182 - -1.2 270,182 - -0.7 270,182 - -0.1 270,296 + MPMX19_06091 0.13 -2.0 270,296 + MPMX19_06091 0.13 -2.1 270,296 + MPMX19_06091 0.13 +0.0 270,296 + MPMX19_06091 0.13 -0.5 270,297 - MPMX19_06091 0.13 -0.1 270,344 + MPMX19_06091 0.16 -1.0 270,344 + MPMX19_06091 0.16 +2.4 270,344 + MPMX19_06091 0.16 -2.0 270,344 + MPMX19_06091 0.16 -1.0 270,344 + MPMX19_06091 0.16 +1.1 270,345 - MPMX19_06091 0.16 +0.0 270,345 - MPMX19_06091 0.16 -0.5
Or see this region's nucleotide sequence