Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05989

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05988 and MPMX19_05989 are separated by 8 nucleotidesMPMX19_05989 and MPMX19_05990 are separated by 109 nucleotidesMPMX19_05990 and MPMX19_05991 overlap by 4 nucleotidesMPMX19_05991 and MPMX19_05992 overlap by 4 nucleotides MPMX19_05988: MPMX19_05988 - Adaptive-response sensory-kinase SasA, at 142,981 to 144,852 _05988 MPMX19_05989: MPMX19_05989 - HTH-type transcriptional regulator HdfR, at 144,861 to 145,775 _05989 MPMX19_05990: MPMX19_05990 - hypothetical protein, at 145,885 to 146,286 _05990 MPMX19_05991: MPMX19_05991 - hypothetical protein, at 146,283 to 146,717 _05991 MPMX19_05992: MPMX19_05992 - hypothetical protein, at 146,714 to 147,280 _05992 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1at 143.988 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.262 kb on + strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.263 kb on - strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.397 kb on + strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.398 kb on - strand, within MPMX19_05988at 144.493 kb on + strand, within MPMX19_05988at 144.493 kb on + strand, within MPMX19_05988at 144.493 kb on + strand, within MPMX19_05988at 144.493 kb on + strand, within MPMX19_05988at 144.493 kb on + strand, within MPMX19_05988at 144.493 kb on + strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.494 kb on - strand, within MPMX19_05988at 144.553 kb on + strand, within MPMX19_05988at 144.553 kb on + strand, within MPMX19_05988at 144.554 kb on - strand, within MPMX19_05988at 144.554 kb on - strand, within MPMX19_05988at 144.554 kb on - strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.622 kb on + strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.623 kb on - strand, within MPMX19_05988at 144.733 kb on + strandat 144.733 kb on + strandat 144.733 kb on + strandat 144.733 kb on + strandat 144.733 kb on + strandat 144.734 kb on - strandat 144.734 kb on - strandat 144.734 kb on - strandat 144.734 kb on - strandat 144.734 kb on - strandat 144.734 kb on - strandat 144.809 kb on + strandat 144.809 kb on + strandat 144.809 kb on + strandat 144.810 kb on - strandat 145.104 kb on + strand, within MPMX19_05989at 145.104 kb on + strand, within MPMX19_05989at 145.105 kb on - strand, within MPMX19_05989at 145.105 kb on - strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.561 kb on + strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.562 kb on - strand, within MPMX19_05989at 145.833 kb on + strandat 145.834 kb on - strandat 145.834 kb on - strandat 145.930 kb on + strand, within MPMX19_05990at 145.930 kb on + strand, within MPMX19_05990at 145.930 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.053 kb on + strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.054 kb on - strand, within MPMX19_05990at 146.140 kb on + strand, within MPMX19_05990at 146.140 kb on + strand, within MPMX19_05990at 146.140 kb on + strand, within MPMX19_05990at 146.141 kb on - strand, within MPMX19_05990at 146.141 kb on - strand, within MPMX19_05990at 146.292 kb on + strandat 146.293 kb on - strandat 146.293 kb on - strandat 146.450 kb on + strand, within MPMX19_05991at 146.450 kb on + strand, within MPMX19_05991at 146.451 kb on - strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.637 kb on + strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.638 kb on - strand, within MPMX19_05991at 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.729 kb on + strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.730 kb on - strandat 146.753 kb on + strandat 146.753 kb on + strandat 146.753 kb on + strandat 146.754 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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143,988 + MPMX19_05988 0.54 -0.9
144,262 + MPMX19_05988 0.68 -0.9
144,262 + MPMX19_05988 0.68 -0.2
144,262 + MPMX19_05988 0.68 -0.2
144,262 + MPMX19_05988 0.68 +0.6
144,262 + MPMX19_05988 0.68 -0.8
144,262 + MPMX19_05988 0.68 -0.2
144,262 + MPMX19_05988 0.68 -1.4
144,262 + MPMX19_05988 0.68 +0.6
144,262 + MPMX19_05988 0.68 +0.4
144,262 + MPMX19_05988 0.68 -0.4
144,262 + MPMX19_05988 0.68 -0.2
144,263 - MPMX19_05988 0.68 -0.8
144,263 - MPMX19_05988 0.68 +1.1
144,263 - MPMX19_05988 0.68 -0.1
144,263 - MPMX19_05988 0.68 -0.6
144,263 - MPMX19_05988 0.68 -1.9
144,263 - MPMX19_05988 0.68 +0.7
144,263 - MPMX19_05988 0.68 +0.4
144,263 - MPMX19_05988 0.68 -1.4
144,263 - MPMX19_05988 0.68 -2.4
144,263 - MPMX19_05988 0.68 -0.7
144,263 - MPMX19_05988 0.68 +0.2
144,397 + MPMX19_05988 0.76 +0.1
144,397 + MPMX19_05988 0.76 +0.0
144,397 + MPMX19_05988 0.76 -0.9
144,397 + MPMX19_05988 0.76 +0.0
144,397 + MPMX19_05988 0.76 +0.1
144,397 + MPMX19_05988 0.76 -1.6
144,397 + MPMX19_05988 0.76 -0.2
144,398 - MPMX19_05988 0.76 +0.7
144,398 - MPMX19_05988 0.76 -0.9
144,398 - MPMX19_05988 0.76 -1.0
144,398 - MPMX19_05988 0.76 -0.9
144,398 - MPMX19_05988 0.76 +1.4
144,398 - MPMX19_05988 0.76 -0.3
144,398 - MPMX19_05988 0.76 -0.2
144,398 - MPMX19_05988 0.76 +0.9
144,398 - MPMX19_05988 0.76 -0.6
144,493 + MPMX19_05988 0.81 -0.1
144,493 + MPMX19_05988 0.81 -0.3
144,493 + MPMX19_05988 0.81 +1.0
144,493 + MPMX19_05988 0.81 -0.4
144,493 + MPMX19_05988 0.81 -1.4
144,493 + MPMX19_05988 0.81 -0.7
144,494 - MPMX19_05988 0.81 -0.2
144,494 - MPMX19_05988 0.81 +0.0
144,494 - MPMX19_05988 0.81 -0.2
144,494 - MPMX19_05988 0.81 +1.0
144,494 - MPMX19_05988 0.81 -1.2
144,494 - MPMX19_05988 0.81 +0.1
144,494 - MPMX19_05988 0.81 +0.0
144,553 + MPMX19_05988 0.84 +0.6
144,553 + MPMX19_05988 0.84 -0.6
144,554 - MPMX19_05988 0.84 -1.5
144,554 - MPMX19_05988 0.84 -0.7
144,554 - MPMX19_05988 0.84 -0.6
144,622 + MPMX19_05988 0.88 -1.7
144,622 + MPMX19_05988 0.88 -1.7
144,622 + MPMX19_05988 0.88 -0.9
144,622 + MPMX19_05988 0.88 -1.6
144,622 + MPMX19_05988 0.88 -0.4
144,622 + MPMX19_05988 0.88 -0.4
144,622 + MPMX19_05988 0.88 -1.6
144,622 + MPMX19_05988 0.88 -0.6
144,622 + MPMX19_05988 0.88 -1.1
144,623 - MPMX19_05988 0.88 +1.1
144,623 - MPMX19_05988 0.88 -1.7
144,623 - MPMX19_05988 0.88 -1.9
144,623 - MPMX19_05988 0.88 +0.0
144,623 - MPMX19_05988 0.88 -0.9
144,623 - MPMX19_05988 0.88 -0.2
144,623 - MPMX19_05988 0.88 +1.6
144,623 - MPMX19_05988 0.88 -1.4
144,623 - MPMX19_05988 0.88 -1.1
144,733 + +0.2
144,733 + -0.3
144,733 + -2.0
144,733 + -0.7
144,733 + -0.9
144,734 - -0.4
144,734 - -3.0
144,734 - -1.5
144,734 - -0.5
144,734 - -0.9
144,734 - +1.0
144,809 + -1.6
144,809 + -1.3
144,809 + -2.1
144,810 - -2.0
145,104 + MPMX19_05989 0.27 -0.6
145,104 + MPMX19_05989 0.27 -0.7
145,105 - MPMX19_05989 0.27 -0.7
145,105 - MPMX19_05989 0.27 -1.0
145,561 + MPMX19_05989 0.77 -2.4
145,561 + MPMX19_05989 0.77 -0.9
145,561 + MPMX19_05989 0.77 -0.7
145,561 + MPMX19_05989 0.77 -0.2
145,562 - MPMX19_05989 0.77 -0.4
145,562 - MPMX19_05989 0.77 -2.1
145,562 - MPMX19_05989 0.77 +0.0
145,562 - MPMX19_05989 0.77 +0.4
145,833 + +0.1
145,834 - -2.5
145,834 - -0.6
145,930 + MPMX19_05990 0.11 +1.0
145,930 + MPMX19_05990 0.11 -1.4
145,930 + MPMX19_05990 0.11 +0.3
146,053 + MPMX19_05990 0.42 +0.3
146,053 + MPMX19_05990 0.42 +0.2
146,053 + MPMX19_05990 0.42 -0.9
146,053 + MPMX19_05990 0.42 -1.6
146,053 + MPMX19_05990 0.42 +0.3
146,053 + MPMX19_05990 0.42 -2.1
146,054 - MPMX19_05990 0.42 -1.0
146,054 - MPMX19_05990 0.42 -0.9
146,054 - MPMX19_05990 0.42 -1.8
146,054 - MPMX19_05990 0.42 -0.4
146,054 - MPMX19_05990 0.42 +0.2
146,054 - MPMX19_05990 0.42 -0.2
146,140 + MPMX19_05990 0.63 -1.1
146,140 + MPMX19_05990 0.63 +0.3
146,140 + MPMX19_05990 0.63 -0.2
146,141 - MPMX19_05990 0.64 -1.2
146,141 - MPMX19_05990 0.64 +0.9
146,292 + -1.1
146,293 - -0.5
146,293 - +1.0
146,450 + MPMX19_05991 0.38 -1.2
146,450 + MPMX19_05991 0.38 -0.8
146,451 - MPMX19_05991 0.39 +0.8
146,637 + MPMX19_05991 0.81 +0.9
146,637 + MPMX19_05991 0.81 +0.0
146,637 + MPMX19_05991 0.81 -1.1
146,637 + MPMX19_05991 0.81 -0.2
146,637 + MPMX19_05991 0.81 -1.4
146,637 + MPMX19_05991 0.81 +0.0
146,637 + MPMX19_05991 0.81 -0.4
146,637 + MPMX19_05991 0.81 +0.2
146,637 + MPMX19_05991 0.81 +0.0
146,637 + MPMX19_05991 0.81 -0.1
146,637 + MPMX19_05991 0.81 -0.6
146,637 + MPMX19_05991 0.81 -0.1
146,637 + MPMX19_05991 0.81 +0.9
146,637 + MPMX19_05991 0.81 +0.0
146,637 + MPMX19_05991 0.81 -0.1
146,637 + MPMX19_05991 0.81 -0.6
146,637 + MPMX19_05991 0.81 -0.8
146,637 + MPMX19_05991 0.81 +0.1
146,637 + MPMX19_05991 0.81 -1.0
146,637 + MPMX19_05991 0.81 +1.0
146,637 + MPMX19_05991 0.81 +0.1
146,637 + MPMX19_05991 0.81 -2.1
146,638 - MPMX19_05991 0.82 +0.0
146,638 - MPMX19_05991 0.82 +1.2
146,638 - MPMX19_05991 0.82 -0.8
146,638 - MPMX19_05991 0.82 -0.2
146,638 - MPMX19_05991 0.82 +0.6
146,638 - MPMX19_05991 0.82 -0.2
146,638 - MPMX19_05991 0.82 +0.4
146,638 - MPMX19_05991 0.82 -0.3
146,638 - MPMX19_05991 0.82 +0.2
146,638 - MPMX19_05991 0.82 +0.1
146,638 - MPMX19_05991 0.82 +0.6
146,638 - MPMX19_05991 0.82 -1.2
146,638 - MPMX19_05991 0.82 -0.5
146,638 - MPMX19_05991 0.82 -0.2
146,638 - MPMX19_05991 0.82 -1.4
146,638 - MPMX19_05991 0.82 -0.1
146,638 - MPMX19_05991 0.82 +1.6
146,638 - MPMX19_05991 0.82 +0.2
146,638 - MPMX19_05991 0.82 -0.5
146,638 - MPMX19_05991 0.82 -0.4
146,638 - MPMX19_05991 0.82 +0.1
146,638 - MPMX19_05991 0.82 +0.2
146,638 - MPMX19_05991 0.82 +0.1
146,638 - MPMX19_05991 0.82 -1.6
146,729 + +0.6
146,729 + -0.7
146,729 + -0.6
146,729 + -0.6
146,729 + +0.2
146,729 + -0.3
146,729 + -1.7
146,729 + +1.4
146,729 + -0.8
146,729 + -0.9
146,730 - -1.0
146,730 - -1.2
146,730 - -1.1
146,730 - -1.1
146,730 - +0.0
146,730 - -0.9
146,730 - -1.2
146,730 - -0.3
146,730 - +0.0
146,730 - -0.5
146,730 - -1.3
146,730 - -0.3
146,730 - -0.2
146,730 - -1.1
146,730 - -0.7
146,730 - -0.9
146,753 + -1.9
146,753 + +0.4
146,753 + -1.6
146,754 - -1.2

Or see this region's nucleotide sequence