Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05830 and MPMX19_05831 are separated by 576 nucleotides MPMX19_05831 and MPMX19_05832 are separated by 252 nucleotides
MPMX19_05830: MPMX19_05830 - Isocitrate lyase, at 559,634 to 560,911
_05830
MPMX19_05831: MPMX19_05831 - Protein/nucleic acid deglycase 2, at 561,488 to 562,051
_05831
MPMX19_05832: MPMX19_05832 - hypothetical protein, at 562,304 to 564,001
_05832
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.555 kb on + strand, within MPMX19_05830 at 560.555 kb on + strand, within MPMX19_05830 at 560.555 kb on + strand, within MPMX19_05830 at 560.555 kb on + strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.556 kb on - strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.615 kb on + strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.616 kb on - strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.642 kb on + strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.643 kb on - strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.687 kb on + strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.688 kb on - strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.714 kb on + strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.715 kb on - strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.738 kb on + strand, within MPMX19_05830 at 560.739 kb on - strand, within MPMX19_05830 at 560.739 kb on - strand, within MPMX19_05830 at 560.739 kb on - strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.783 kb on + strand, within MPMX19_05830 at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.784 kb on - strand at 560.822 kb on + strand at 560.823 kb on - strand at 560.823 kb on - strand at 560.823 kb on - strand at 560.823 kb on - strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.876 kb on + strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 560.877 kb on - strand at 561.066 kb on - strand at 561.095 kb on + strand at 561.095 kb on + strand at 561.096 kb on - strand at 561.127 kb on - strand at 561.127 kb on - strand at 561.164 kb on + strand at 561.164 kb on + strand at 561.164 kb on + strand at 561.164 kb on + strand at 561.165 kb on - strand at 561.165 kb on - strand at 561.165 kb on - strand at 561.165 kb on - strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.265 kb on + strand at 561.266 kb on - strand at 561.266 kb on - strand at 561.266 kb on - strand at 561.266 kb on - strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.301 kb on + strand at 561.302 kb on - strand at 561.302 kb on - strand at 561.302 kb on - strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.457 kb on + strand at 561.458 kb on - strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.487 kb on + strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.488 kb on - strand at 561.577 kb on + strand, within MPMX19_05831 at 561.577 kb on + strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.578 kb on - strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.659 kb on + strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.660 kb on - strand, within MPMX19_05831 at 561.890 kb on + strand, within MPMX19_05831 at 562.128 kb on + strand at 562.128 kb on + strand at 562.128 kb on + strand at 562.209 kb on + strand at 562.209 kb on + strand at 562.228 kb on + strand at 562.231 kb on + strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.232 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.249 kb on - strand at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.529 kb on + strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.530 kb on - strand, within MPMX19_05832 at 562.624 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.688 kb on + strand, within MPMX19_05832 at 562.689 kb on - strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.868 kb on + strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832 at 562.869 kb on - strand, within MPMX19_05832
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 560,555 + MPMX19_05830 0.72 +0.3 560,555 + MPMX19_05830 0.72 +0.4 560,555 + MPMX19_05830 0.72 -1.2 560,555 + MPMX19_05830 0.72 -1.4 560,556 - MPMX19_05830 0.72 +0.2 560,556 - MPMX19_05830 0.72 +0.3 560,556 - MPMX19_05830 0.72 -0.9 560,556 - MPMX19_05830 0.72 -2.3 560,556 - MPMX19_05830 0.72 -0.6 560,556 - MPMX19_05830 0.72 +0.6 560,615 + MPMX19_05830 0.77 -1.2 560,615 + MPMX19_05830 0.77 -0.4 560,615 + MPMX19_05830 0.77 -1.7 560,615 + MPMX19_05830 0.77 +1.1 560,615 + MPMX19_05830 0.77 +1.7 560,615 + MPMX19_05830 0.77 -1.1 560,616 - MPMX19_05830 0.77 -1.1 560,616 - MPMX19_05830 0.77 -0.2 560,616 - MPMX19_05830 0.77 -0.6 560,616 - MPMX19_05830 0.77 +0.3 560,616 - MPMX19_05830 0.77 +0.2 560,616 - MPMX19_05830 0.77 -0.7 560,616 - MPMX19_05830 0.77 +0.4 560,642 + MPMX19_05830 0.79 -0.6 560,642 + MPMX19_05830 0.79 -1.9 560,642 + MPMX19_05830 0.79 -0.6 560,642 + MPMX19_05830 0.79 -0.0 560,642 + MPMX19_05830 0.79 +0.8 560,642 + MPMX19_05830 0.79 -0.3 560,642 + MPMX19_05830 0.79 -1.3 560,643 - MPMX19_05830 0.79 -0.1 560,643 - MPMX19_05830 0.79 -2.0 560,643 - MPMX19_05830 0.79 -0.4 560,643 - MPMX19_05830 0.79 -1.5 560,643 - MPMX19_05830 0.79 +0.2 560,643 - MPMX19_05830 0.79 +0.4 560,687 + MPMX19_05830 0.82 -1.2 560,687 + MPMX19_05830 0.82 -0.6 560,687 + MPMX19_05830 0.82 +0.7 560,687 + MPMX19_05830 0.82 -1.2 560,687 + MPMX19_05830 0.82 -0.6 560,688 - MPMX19_05830 0.82 -0.3 560,688 - MPMX19_05830 0.82 +0.1 560,688 - MPMX19_05830 0.82 -0.5 560,688 - MPMX19_05830 0.82 -0.2 560,688 - MPMX19_05830 0.82 -0.6 560,714 + MPMX19_05830 0.85 -0.6 560,714 + MPMX19_05830 0.85 +0.3 560,714 + MPMX19_05830 0.85 +0.3 560,714 + MPMX19_05830 0.85 -1.2 560,714 + MPMX19_05830 0.85 +0.8 560,714 + MPMX19_05830 0.85 -0.6 560,714 + MPMX19_05830 0.85 +0.6 560,715 - MPMX19_05830 0.85 -2.4 560,715 - MPMX19_05830 0.85 -1.1 560,715 - MPMX19_05830 0.85 -0.3 560,715 - MPMX19_05830 0.85 -1.9 560,738 + MPMX19_05830 0.86 -0.2 560,738 + MPMX19_05830 0.86 -1.0 560,738 + MPMX19_05830 0.86 -0.5 560,738 + MPMX19_05830 0.86 -0.3 560,738 + MPMX19_05830 0.86 -1.9 560,738 + MPMX19_05830 0.86 -0.0 560,739 - MPMX19_05830 0.86 -0.9 560,739 - MPMX19_05830 0.86 +1.1 560,739 - MPMX19_05830 0.86 -0.8 560,783 + MPMX19_05830 0.90 -0.1 560,783 + MPMX19_05830 0.90 -1.2 560,783 + MPMX19_05830 0.90 -1.2 560,783 + MPMX19_05830 0.90 -0.4 560,783 + MPMX19_05830 0.90 -0.2 560,783 + MPMX19_05830 0.90 -1.5 560,784 - -1.0 560,784 - +0.2 560,784 - +0.5 560,784 - -1.0 560,784 - -0.0 560,784 - -0.2 560,784 - +0.4 560,784 - -1.0 560,784 - -0.0 560,784 - -0.0 560,784 - +0.2 560,784 - +1.6 560,784 - -0.5 560,822 + -0.7 560,823 - -2.2 560,823 - +0.2 560,823 - -0.3 560,823 - +0.1 560,876 + -0.4 560,876 + -0.5 560,876 + -1.9 560,876 + +0.1 560,876 + +0.4 560,876 + -1.7 560,876 + -1.0 560,877 - -1.5 560,877 - +0.3 560,877 - -0.4 560,877 - -1.3 560,877 - -1.6 560,877 - -1.2 560,877 - -0.1 560,877 - -0.4 560,877 - -0.7 560,877 - -0.4 560,877 - +1.6 560,877 - -0.7 560,877 - -1.4 560,877 - -0.0 560,877 - -0.3 561,066 - -0.3 561,095 + -0.2 561,095 + -1.0 561,096 - -0.6 561,127 - +0.3 561,127 - -1.2 561,164 + -0.3 561,164 + -0.2 561,164 + -0.4 561,164 + +0.7 561,165 - +0.2 561,165 - -0.6 561,165 - -1.9 561,165 - -1.1 561,265 + +0.1 561,265 + +0.5 561,265 + -0.7 561,265 + -0.0 561,265 + -1.2 561,265 + -0.4 561,265 + -1.2 561,266 - +0.3 561,266 - -2.7 561,266 - -0.7 561,266 - -2.1 561,301 + +0.4 561,301 + -0.1 561,301 + -1.4 561,301 + -1.5 561,301 + -0.1 561,301 + -0.5 561,301 + +0.2 561,301 + -1.2 561,302 - +0.4 561,302 - +0.2 561,302 - -0.5 561,457 + +0.8 561,457 + -0.1 561,457 + -1.4 561,457 + -0.7 561,457 + -0.2 561,457 + -2.1 561,458 - -0.9 561,487 + -0.0 561,487 + -1.0 561,487 + +1.0 561,488 - +1.9 561,488 - +1.6 561,488 - -1.2 561,488 - -2.9 561,488 - -2.0 561,488 - -1.0 561,488 - +0.9 561,577 + MPMX19_05831 0.16 -0.4 561,577 + MPMX19_05831 0.16 +1.6 561,578 - MPMX19_05831 0.16 -0.0 561,578 - MPMX19_05831 0.16 +0.1 561,659 + MPMX19_05831 0.30 -1.6 561,659 + MPMX19_05831 0.30 -1.2 561,659 + MPMX19_05831 0.30 +0.6 561,659 + MPMX19_05831 0.30 -1.9 561,659 + MPMX19_05831 0.30 -1.4 561,659 + MPMX19_05831 0.30 -0.4 561,659 + MPMX19_05831 0.30 -0.9 561,659 + MPMX19_05831 0.30 -1.6 561,660 - MPMX19_05831 0.30 -1.0 561,660 - MPMX19_05831 0.30 -1.6 561,660 - MPMX19_05831 0.30 -0.4 561,890 + MPMX19_05831 0.71 -0.5 562,128 + +1.0 562,128 + +0.4 562,128 + +0.7 562,209 + -1.0 562,209 + +1.3 562,228 + -1.0 562,231 + -0.7 562,232 - +0.1 562,232 - +0.1 562,232 - +1.0 562,249 - -0.9 562,249 - -1.0 562,249 - -0.1 562,529 + MPMX19_05832 0.13 +0.8 562,529 + MPMX19_05832 0.13 -0.0 562,529 + MPMX19_05832 0.13 +1.4 562,529 + MPMX19_05832 0.13 +0.9 562,530 - MPMX19_05832 0.13 -0.4 562,530 - MPMX19_05832 0.13 -3.3 562,530 - MPMX19_05832 0.13 -1.9 562,624 + MPMX19_05832 0.19 +0.1 562,688 + MPMX19_05832 0.23 +0.4 562,688 + MPMX19_05832 0.23 -0.9 562,688 + MPMX19_05832 0.23 -0.4 562,689 - MPMX19_05832 0.23 +0.4 562,868 + MPMX19_05832 0.33 -0.2 562,868 + MPMX19_05832 0.33 -1.2 562,868 + MPMX19_05832 0.33 +0.5 562,868 + MPMX19_05832 0.33 -0.4 562,868 + MPMX19_05832 0.33 -1.2 562,869 - MPMX19_05832 0.33 -1.4 562,869 - MPMX19_05832 0.33 -1.7 562,869 - MPMX19_05832 0.33 -2.0 562,869 - MPMX19_05832 0.33 -0.2 562,869 - MPMX19_05832 0.33 +0.2
Or see this region's nucleotide sequence