Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05785 and MPMX19_05786 are separated by 154 nucleotides MPMX19_05786 and MPMX19_05787 are separated by 15 nucleotides MPMX19_05787 and MPMX19_05788 are separated by 236 nucleotides
MPMX19_05785: MPMX19_05785 - hypothetical protein, at 508,338 to 509,354
_05785
MPMX19_05786: MPMX19_05786 - HTH-type transcriptional repressor RspR, at 509,509 to 510,267
_05786
MPMX19_05787: MPMX19_05787 - Methylglyoxal synthase, at 510,283 to 510,750
_05787
MPMX19_05788: MPMX19_05788 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 510,987 to 511,823
_05788
Position (kb) 510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 509.316 kb on + strand at 509.316 kb on + strand at 509.317 kb on - strand at 509.317 kb on - strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.352 kb on + strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.353 kb on - strand at 509.452 kb on + strand at 509.452 kb on + strand at 509.453 kb on - strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.454 kb on + strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.455 kb on - strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.457 kb on + strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.458 kb on - strand at 509.460 kb on + strand at 509.461 kb on - strand at 509.461 kb on - strand at 509.477 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.508 kb on + strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.509 kb on - strand at 509.529 kb on + strand at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.635 kb on + strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.636 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.717 kb on - strand, within MPMX19_05786 at 509.881 kb on + strand, within MPMX19_05786 at 510.244 kb on + strand at 510.245 kb on - strand at 510.245 kb on - strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.254 kb on - strand at 510.302 kb on + strand at 510.303 kb on - strand at 510.303 kb on - strand at 510.332 kb on + strand, within MPMX19_05787 at 510.333 kb on - strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.404 kb on + strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.405 kb on - strand, within MPMX19_05787 at 510.782 kb on - strand at 510.782 kb on - strand at 510.785 kb on - strand at 510.787 kb on - strand at 510.787 kb on - strand at 510.898 kb on + strand at 510.898 kb on + strand at 510.898 kb on + strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.899 kb on - strand at 510.971 kb on + strand at 510.971 kb on + strand at 510.971 kb on + strand at 510.972 kb on - strand at 510.972 kb on - strand at 510.972 kb on - strand at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.107 kb on + strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.108 kb on - strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.272 kb on + strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.273 kb on - strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.299 kb on + strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.300 kb on - strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.365 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.476 kb on + strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.477 kb on - strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.599 kb on + strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.600 kb on - strand, within MPMX19_05788 at 511.605 kb on + strand, within MPMX19_05788 at 511.606 kb on - strand, within MPMX19_05788 at 511.606 kb on - strand, within MPMX19_05788 at 511.606 kb on - strand, within MPMX19_05788 at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.743 kb on + strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand at 511.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 509,316 + -0.1 509,316 + -1.1 509,317 - -0.4 509,317 - -0.9 509,352 + +0.3 509,352 + -1.0 509,352 + -0.8 509,352 + -0.9 509,352 + -0.1 509,352 + -0.4 509,352 + -1.4 509,353 - -0.2 509,353 - -0.1 509,353 - +1.8 509,353 - +1.1 509,353 - -0.3 509,353 - -0.2 509,452 + -0.7 509,452 + +0.4 509,453 - +0.2 509,454 + -0.3 509,454 + +0.8 509,454 + -1.0 509,454 + +0.3 509,454 + -0.9 509,454 + -0.8 509,454 + -1.4 509,454 + +0.6 509,454 + -0.6 509,455 - -0.7 509,455 - -1.4 509,455 - -0.5 509,455 - -0.6 509,457 + -0.4 509,457 + -0.0 509,457 + -0.6 509,457 + -1.0 509,458 - -1.4 509,458 - -0.2 509,458 - +0.9 509,458 - +1.6 509,458 - -0.3 509,460 + -0.5 509,461 - -0.0 509,461 - -0.1 509,477 + -0.8 509,508 + -0.2 509,508 + +0.5 509,508 + +1.3 509,508 + +0.1 509,508 + -1.2 509,509 - -0.0 509,509 - -0.7 509,509 - +0.6 509,509 - -0.7 509,509 - -1.4 509,529 + -1.9 509,635 + MPMX19_05786 0.17 +0.2 509,635 + MPMX19_05786 0.17 -0.7 509,635 + MPMX19_05786 0.17 -0.4 509,635 + MPMX19_05786 0.17 +0.3 509,635 + MPMX19_05786 0.17 -0.9 509,636 - MPMX19_05786 0.17 -0.2 509,636 - MPMX19_05786 0.17 +1.2 509,636 - MPMX19_05786 0.17 +0.1 509,636 - MPMX19_05786 0.17 -0.0 509,636 - MPMX19_05786 0.17 +0.4 509,636 - MPMX19_05786 0.17 -2.0 509,717 - MPMX19_05786 0.27 -1.7 509,717 - MPMX19_05786 0.27 -0.6 509,717 - MPMX19_05786 0.27 +0.1 509,717 - MPMX19_05786 0.27 -0.0 509,717 - MPMX19_05786 0.27 +0.6 509,717 - MPMX19_05786 0.27 -1.1 509,717 - MPMX19_05786 0.27 -0.0 509,881 + MPMX19_05786 0.49 -0.2 510,244 + -1.9 510,245 - -0.2 510,245 - -1.3 510,253 + -0.9 510,254 - +0.6 510,254 - -0.7 510,254 - -1.4 510,254 - -0.4 510,302 + +0.5 510,303 - -1.2 510,303 - -1.6 510,332 + MPMX19_05787 0.10 -0.4 510,333 - MPMX19_05787 0.11 -1.2 510,404 + MPMX19_05787 0.26 +0.3 510,404 + MPMX19_05787 0.26 -0.5 510,404 + MPMX19_05787 0.26 -1.4 510,404 + MPMX19_05787 0.26 -0.0 510,404 + MPMX19_05787 0.26 -2.2 510,405 - MPMX19_05787 0.26 -1.4 510,405 - MPMX19_05787 0.26 +0.6 510,405 - MPMX19_05787 0.26 -1.7 510,405 - MPMX19_05787 0.26 -0.9 510,405 - MPMX19_05787 0.26 -1.3 510,405 - MPMX19_05787 0.26 -1.2 510,405 - MPMX19_05787 0.26 -0.0 510,405 - MPMX19_05787 0.26 -1.0 510,405 - MPMX19_05787 0.26 -1.4 510,405 - MPMX19_05787 0.26 -0.9 510,405 - MPMX19_05787 0.26 -1.2 510,782 - -0.4 510,782 - +1.4 510,785 - +0.4 510,787 - -1.7 510,787 - +0.8 510,898 + +0.4 510,898 + +0.9 510,898 + -0.0 510,899 - -1.7 510,899 - -0.1 510,899 - +0.2 510,899 - -1.7 510,899 - +0.2 510,899 - +0.3 510,971 + -0.5 510,971 + -0.4 510,971 + -0.4 510,972 - +0.1 510,972 - -2.3 510,972 - -0.3 511,107 + MPMX19_05788 0.14 -0.5 511,107 + MPMX19_05788 0.14 -0.4 511,107 + MPMX19_05788 0.14 -0.9 511,107 + MPMX19_05788 0.14 -0.5 511,107 + MPMX19_05788 0.14 +0.2 511,107 + MPMX19_05788 0.14 -0.6 511,107 + MPMX19_05788 0.14 -1.1 511,107 + MPMX19_05788 0.14 -0.2 511,107 + MPMX19_05788 0.14 +1.8 511,107 + MPMX19_05788 0.14 +0.6 511,107 + MPMX19_05788 0.14 +0.8 511,107 + MPMX19_05788 0.14 -0.0 511,108 - MPMX19_05788 0.14 -0.5 511,108 - MPMX19_05788 0.14 -0.1 511,108 - MPMX19_05788 0.14 +0.1 511,108 - MPMX19_05788 0.14 +0.2 511,108 - MPMX19_05788 0.14 -0.7 511,108 - MPMX19_05788 0.14 -1.7 511,108 - MPMX19_05788 0.14 +0.1 511,108 - MPMX19_05788 0.14 +0.1 511,108 - MPMX19_05788 0.14 -0.1 511,108 - MPMX19_05788 0.14 +0.1 511,108 - MPMX19_05788 0.14 -3.3 511,272 + MPMX19_05788 0.34 -1.7 511,272 + MPMX19_05788 0.34 -0.1 511,272 + MPMX19_05788 0.34 -0.1 511,272 + MPMX19_05788 0.34 -0.5 511,272 + MPMX19_05788 0.34 +0.2 511,272 + MPMX19_05788 0.34 -1.7 511,272 + MPMX19_05788 0.34 -1.7 511,273 - MPMX19_05788 0.34 -2.0 511,273 - MPMX19_05788 0.34 -0.4 511,273 - MPMX19_05788 0.34 -1.3 511,273 - MPMX19_05788 0.34 -0.5 511,273 - MPMX19_05788 0.34 -0.6 511,299 + MPMX19_05788 0.37 +0.7 511,299 + MPMX19_05788 0.37 -2.1 511,299 + MPMX19_05788 0.37 -1.0 511,299 + MPMX19_05788 0.37 -0.8 511,299 + MPMX19_05788 0.37 -0.4 511,299 + MPMX19_05788 0.37 -1.4 511,299 + MPMX19_05788 0.37 -0.6 511,299 + MPMX19_05788 0.37 -0.6 511,300 - MPMX19_05788 0.37 -0.3 511,300 - MPMX19_05788 0.37 -1.7 511,300 - MPMX19_05788 0.37 +0.3 511,300 - MPMX19_05788 0.37 +0.4 511,300 - MPMX19_05788 0.37 -0.6 511,300 - MPMX19_05788 0.37 -0.9 511,300 - MPMX19_05788 0.37 -0.0 511,365 + MPMX19_05788 0.45 -0.3 511,365 + MPMX19_05788 0.45 -0.6 511,365 + MPMX19_05788 0.45 +1.2 511,365 + MPMX19_05788 0.45 +0.6 511,365 + MPMX19_05788 0.45 -0.1 511,365 + MPMX19_05788 0.45 +1.0 511,476 + MPMX19_05788 0.58 -0.9 511,476 + MPMX19_05788 0.58 +0.1 511,476 + MPMX19_05788 0.58 +1.2 511,476 + MPMX19_05788 0.58 -1.5 511,476 + MPMX19_05788 0.58 -0.4 511,476 + MPMX19_05788 0.58 -1.7 511,476 + MPMX19_05788 0.58 +0.6 511,477 - MPMX19_05788 0.59 -0.9 511,477 - MPMX19_05788 0.59 -0.4 511,477 - MPMX19_05788 0.59 -0.6 511,477 - MPMX19_05788 0.59 +0.8 511,477 - MPMX19_05788 0.59 -1.0 511,477 - MPMX19_05788 0.59 -1.7 511,477 - MPMX19_05788 0.59 -1.2 511,599 + MPMX19_05788 0.73 -1.2 511,599 + MPMX19_05788 0.73 -0.3 511,599 + MPMX19_05788 0.73 +0.6 511,599 + MPMX19_05788 0.73 +0.4 511,599 + MPMX19_05788 0.73 -0.8 511,599 + MPMX19_05788 0.73 -0.1 511,599 + MPMX19_05788 0.73 -0.7 511,599 + MPMX19_05788 0.73 -0.9 511,599 + MPMX19_05788 0.73 +1.2 511,599 + MPMX19_05788 0.73 -1.6 511,599 + MPMX19_05788 0.73 -2.0 511,599 + MPMX19_05788 0.73 +0.4 511,599 + MPMX19_05788 0.73 -0.4 511,600 - MPMX19_05788 0.73 -1.0 511,600 - MPMX19_05788 0.73 -0.7 511,600 - MPMX19_05788 0.73 +0.5 511,600 - MPMX19_05788 0.73 -1.5 511,600 - MPMX19_05788 0.73 -1.1 511,600 - MPMX19_05788 0.73 +1.0 511,600 - MPMX19_05788 0.73 +0.4 511,600 - MPMX19_05788 0.73 +1.2 511,600 - MPMX19_05788 0.73 +1.6 511,605 + MPMX19_05788 0.74 -0.7 511,606 - MPMX19_05788 0.74 +0.6 511,606 - MPMX19_05788 0.74 -0.2 511,606 - MPMX19_05788 0.74 +0.3 511,743 + -1.1 511,743 + +0.1 511,743 + -0.3 511,743 + -0.0 511,743 + -0.3 511,743 + -1.0 511,743 + -0.7 511,743 + -0.0 511,743 + +1.2 511,743 + +0.1 511,744 - -0.5 511,744 - +0.7 511,744 - +0.3 511,744 - -1.4 511,744 - +0.7 511,744 - -0.4 511,744 - -0.9 511,744 - +0.2 511,744 - -0.3 511,744 - +1.1 511,744 - +0.4 511,744 - +1.0 511,744 - -0.8 511,744 - -0.4 511,744 - -0.4 511,744 - +0.9 511,744 - +0.2 511,744 - -0.9 511,744 - +1.2
Or see this region's nucleotide sequence