Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05512 and MPMX19_05513 are separated by 115 nucleotides MPMX19_05513 and MPMX19_05514 are separated by 137 nucleotides
MPMX19_05512: MPMX19_05512 - Homoserine/homoserine lactone efflux protein, at 217,266 to 217,892
_05512
MPMX19_05513: MPMX19_05513 - 3'3'-cGAMP-specific phosphodiesterase 2, at 218,008 to 219,573
_05513
MPMX19_05514: MPMX19_05514 - 4-hydroxy-tetrahydrodipicolinate reductase, at 219,711 to 220,508
_05514
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.062 kb on + strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.063 kb on - strand at 217.077 kb on + strand at 217.243 kb on + strand at 217.244 kb on - strand at 217.244 kb on - strand at 217.249 kb on + strand at 217.249 kb on + strand at 217.249 kb on + strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.250 kb on - strand at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.353 kb on + strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.354 kb on - strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.509 kb on + strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.510 kb on - strand, within MPMX19_05512 at 217.518 kb on + strand, within MPMX19_05512 at 217.518 kb on + strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.519 kb on - strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.614 kb on + strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.615 kb on - strand, within MPMX19_05512 at 217.761 kb on + strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.762 kb on - strand, within MPMX19_05512 at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.914 kb on + strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.915 kb on - strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.916 kb on + strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 217.917 kb on - strand at 218.236 kb on + strand, within MPMX19_05513 at 218.236 kb on + strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.237 kb on - strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.452 kb on + strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.453 kb on - strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.488 kb on + strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.489 kb on - strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.518 kb on + strand, within MPMX19_05513 at 218.519 kb on - strand, within MPMX19_05513 at 218.519 kb on - strand, within MPMX19_05513 at 218.947 kb on + strand, within MPMX19_05513 at 218.947 kb on + strand, within MPMX19_05513 at 218.947 kb on + strand, within MPMX19_05513 at 218.948 kb on - strand, within MPMX19_05513 at 218.948 kb on - strand, within MPMX19_05513 at 219.007 kb on + strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.008 kb on - strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.295 kb on + strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.296 kb on - strand, within MPMX19_05513 at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.448 kb on + strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.449 kb on - strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.571 kb on + strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.572 kb on - strand at 219.596 kb on + strand at 219.596 kb on + strand at 219.597 kb on - strand at 219.613 kb on + strand at 219.613 kb on + strand at 219.614 kb on - strand at 219.614 kb on - strand at 219.614 kb on - strand at 219.696 kb on + strand at 219.696 kb on + strand at 219.696 kb on + strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand at 220.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 217,062 + -0.4 217,062 + -0.4 217,062 + -0.8 217,062 + +0.6 217,062 + +0.4 217,062 + +0.9 217,063 - +1.3 217,063 - +0.1 217,063 - -0.0 217,063 - +0.5 217,063 - +0.5 217,077 + -1.0 217,243 + -0.6 217,244 - +0.8 217,244 - +0.6 217,249 + -1.7 217,249 + -0.9 217,249 + -0.7 217,250 - -1.1 217,250 - +0.6 217,250 - -1.2 217,250 - -0.7 217,250 - -0.0 217,353 + MPMX19_05512 0.14 +0.4 217,353 + MPMX19_05512 0.14 -0.7 217,353 + MPMX19_05512 0.14 -1.0 217,353 + MPMX19_05512 0.14 -0.7 217,353 + MPMX19_05512 0.14 -2.1 217,353 + MPMX19_05512 0.14 +0.4 217,353 + MPMX19_05512 0.14 +0.8 217,353 + MPMX19_05512 0.14 -1.4 217,353 + MPMX19_05512 0.14 -0.6 217,353 + MPMX19_05512 0.14 -0.4 217,353 + MPMX19_05512 0.14 -0.7 217,353 + MPMX19_05512 0.14 -0.6 217,353 + MPMX19_05512 0.14 -0.7 217,353 + MPMX19_05512 0.14 +0.7 217,354 - MPMX19_05512 0.14 +0.7 217,354 - MPMX19_05512 0.14 +0.3 217,354 - MPMX19_05512 0.14 -0.7 217,354 - MPMX19_05512 0.14 +0.7 217,354 - MPMX19_05512 0.14 -1.5 217,354 - MPMX19_05512 0.14 +0.4 217,354 - MPMX19_05512 0.14 -0.6 217,354 - MPMX19_05512 0.14 -0.6 217,354 - MPMX19_05512 0.14 +0.6 217,354 - MPMX19_05512 0.14 -1.0 217,354 - MPMX19_05512 0.14 -0.2 217,354 - MPMX19_05512 0.14 -0.3 217,354 - MPMX19_05512 0.14 -0.2 217,354 - MPMX19_05512 0.14 +0.9 217,354 - MPMX19_05512 0.14 -1.1 217,509 + MPMX19_05512 0.39 +0.8 217,509 + MPMX19_05512 0.39 +0.3 217,509 + MPMX19_05512 0.39 -0.9 217,509 + MPMX19_05512 0.39 -1.2 217,510 - MPMX19_05512 0.39 -0.7 217,510 - MPMX19_05512 0.39 -1.3 217,510 - MPMX19_05512 0.39 -0.7 217,510 - MPMX19_05512 0.39 -0.6 217,510 - MPMX19_05512 0.39 +0.2 217,518 + MPMX19_05512 0.40 -0.5 217,518 + MPMX19_05512 0.40 -2.2 217,519 - MPMX19_05512 0.40 +0.4 217,519 - MPMX19_05512 0.40 -0.9 217,519 - MPMX19_05512 0.40 -0.7 217,519 - MPMX19_05512 0.40 +0.9 217,519 - MPMX19_05512 0.40 -0.6 217,519 - MPMX19_05512 0.40 +0.6 217,614 + MPMX19_05512 0.56 -0.2 217,614 + MPMX19_05512 0.56 -0.3 217,614 + MPMX19_05512 0.56 +0.6 217,614 + MPMX19_05512 0.56 +0.4 217,614 + MPMX19_05512 0.56 -0.8 217,614 + MPMX19_05512 0.56 +0.9 217,614 + MPMX19_05512 0.56 -1.0 217,614 + MPMX19_05512 0.56 -1.4 217,614 + MPMX19_05512 0.56 -2.2 217,614 + MPMX19_05512 0.56 -0.5 217,614 + MPMX19_05512 0.56 -1.8 217,614 + MPMX19_05512 0.56 -0.2 217,614 + MPMX19_05512 0.56 -0.6 217,614 + MPMX19_05512 0.56 +0.2 217,614 + MPMX19_05512 0.56 -0.5 217,615 - MPMX19_05512 0.56 -1.1 217,615 - MPMX19_05512 0.56 -0.2 217,615 - MPMX19_05512 0.56 -0.5 217,615 - MPMX19_05512 0.56 -0.4 217,615 - MPMX19_05512 0.56 -0.3 217,615 - MPMX19_05512 0.56 +1.1 217,615 - MPMX19_05512 0.56 -0.5 217,615 - MPMX19_05512 0.56 -1.1 217,615 - MPMX19_05512 0.56 -0.4 217,615 - MPMX19_05512 0.56 +2.1 217,615 - MPMX19_05512 0.56 +0.8 217,615 - MPMX19_05512 0.56 -0.7 217,615 - MPMX19_05512 0.56 -0.6 217,761 + MPMX19_05512 0.79 -0.0 217,762 - MPMX19_05512 0.79 -0.2 217,762 - MPMX19_05512 0.79 +1.2 217,762 - MPMX19_05512 0.79 -1.5 217,914 + -1.2 217,914 + -0.4 217,914 + -0.9 217,914 + -1.8 217,914 + -0.6 217,914 + -1.9 217,914 + -0.5 217,914 + +0.8 217,914 + -1.2 217,914 + +0.1 217,914 + +0.6 217,914 + -0.1 217,914 + +1.4 217,915 - +0.2 217,915 - -0.2 217,915 - -0.8 217,915 - -0.5 217,915 - -2.8 217,916 + -1.7 217,916 + -1.0 217,916 + +0.3 217,916 + +0.1 217,916 + -0.9 217,916 + +0.2 217,916 + +0.5 217,917 - +0.3 217,917 - +1.0 217,917 - -0.4 217,917 - -0.9 217,917 - +0.1 217,917 - -2.7 217,917 - +0.3 217,917 - -1.8 217,917 - +0.5 217,917 - -2.0 217,917 - +0.6 217,917 - +0.1 217,917 - +0.1 218,236 + MPMX19_05513 0.15 +0.3 218,236 + MPMX19_05513 0.15 -0.9 218,237 - MPMX19_05513 0.15 -0.6 218,237 - MPMX19_05513 0.15 -0.2 218,237 - MPMX19_05513 0.15 -1.5 218,237 - MPMX19_05513 0.15 -1.0 218,237 - MPMX19_05513 0.15 +1.8 218,237 - MPMX19_05513 0.15 +0.8 218,237 - MPMX19_05513 0.15 -0.4 218,452 + MPMX19_05513 0.28 -0.4 218,452 + MPMX19_05513 0.28 -1.5 218,452 + MPMX19_05513 0.28 -3.4 218,452 + MPMX19_05513 0.28 -0.6 218,452 + MPMX19_05513 0.28 +0.3 218,452 + MPMX19_05513 0.28 -1.5 218,453 - MPMX19_05513 0.28 +0.4 218,453 - MPMX19_05513 0.28 -0.2 218,453 - MPMX19_05513 0.28 -2.2 218,488 + MPMX19_05513 0.31 +0.9 218,488 + MPMX19_05513 0.31 +0.2 218,488 + MPMX19_05513 0.31 -0.2 218,489 - MPMX19_05513 0.31 +1.1 218,489 - MPMX19_05513 0.31 +0.8 218,489 - MPMX19_05513 0.31 -1.5 218,518 + MPMX19_05513 0.33 +0.6 218,518 + MPMX19_05513 0.33 -0.8 218,518 + MPMX19_05513 0.33 -1.6 218,518 + MPMX19_05513 0.33 -1.2 218,519 - MPMX19_05513 0.33 +1.6 218,519 - MPMX19_05513 0.33 -1.8 218,947 + MPMX19_05513 0.60 -1.1 218,947 + MPMX19_05513 0.60 -1.2 218,947 + MPMX19_05513 0.60 -0.2 218,948 - MPMX19_05513 0.60 -1.5 218,948 - MPMX19_05513 0.60 -2.6 219,007 + MPMX19_05513 0.64 -0.4 219,008 - MPMX19_05513 0.64 -1.7 219,008 - MPMX19_05513 0.64 +0.6 219,008 - MPMX19_05513 0.64 +0.3 219,008 - MPMX19_05513 0.64 -1.2 219,008 - MPMX19_05513 0.64 -0.4 219,295 + MPMX19_05513 0.82 +0.4 219,295 + MPMX19_05513 0.82 -0.3 219,295 + MPMX19_05513 0.82 -0.5 219,295 + MPMX19_05513 0.82 -0.1 219,296 - MPMX19_05513 0.82 +0.1 219,296 - MPMX19_05513 0.82 -0.5 219,296 - MPMX19_05513 0.82 -0.9 219,296 - MPMX19_05513 0.82 +1.6 219,296 - MPMX19_05513 0.82 -0.2 219,296 - MPMX19_05513 0.82 -0.4 219,296 - MPMX19_05513 0.82 -1.4 219,296 - MPMX19_05513 0.82 -1.4 219,296 - MPMX19_05513 0.82 -1.5 219,448 + -0.8 219,448 + -2.4 219,448 + -1.7 219,448 + +0.6 219,448 + +0.6 219,448 + -0.6 219,449 - -2.2 219,449 - -0.9 219,449 - -2.7 219,449 - -1.4 219,449 - -1.5 219,449 - +0.1 219,571 + -1.8 219,571 + -1.2 219,571 + -0.3 219,571 + -0.3 219,571 + -0.0 219,571 + -1.9 219,571 + -2.1 219,571 + -0.3 219,571 + -0.2 219,571 + +0.2 219,571 + +0.6 219,572 - -1.1 219,572 - -1.4 219,572 - -0.2 219,572 - -1.8 219,572 - +0.2 219,572 - +0.4 219,572 - +0.0 219,572 - -0.4 219,596 + +0.2 219,596 + +0.2 219,597 - -0.5 219,613 + +0.7 219,613 + +0.1 219,614 - -0.3 219,614 - +1.0 219,614 - -1.3 219,696 + +0.3 219,696 + -0.4 219,696 + -0.2 220,568 - -1.4 220,568 - -1.2 220,568 - -2.1 220,568 - -1.1 220,568 - -0.4 220,568 - -0.9 220,568 - -0.1 220,568 - -0.1
Or see this region's nucleotide sequence