Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05393 and MPMX19_05394 are separated by 210 nucleotides MPMX19_05394 and MPMX19_05395 are separated by 186 nucleotides MPMX19_05395 and MPMX19_05396 overlap by 8 nucleotides
MPMX19_05393: MPMX19_05393 - hypothetical protein, at 72,183 to 73,124
_05393
MPMX19_05394: MPMX19_05394 - L-cystine-binding protein FliY, at 73,335 to 74,138
_05394
MPMX19_05395: MPMX19_05395 - L-cystine transport system permease protein TcyB, at 74,325 to 74,999
_05395
MPMX19_05396: MPMX19_05396 - L-cystine transport system permease protein YecS, at 74,992 to 75,642
_05396
Position (kb) 73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 72.614 kb on - strand, within MPMX19_05393 at 72.614 kb on - strand, within MPMX19_05393 at 72.614 kb on - strand, within MPMX19_05393 at 72.892 kb on + strand, within MPMX19_05393 at 72.893 kb on - strand, within MPMX19_05393 at 73.022 kb on + strand, within MPMX19_05393 at 73.023 kb on - strand, within MPMX19_05393 at 73.023 kb on - strand, within MPMX19_05393 at 73.039 kb on + strand at 73.039 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.194 kb on + strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.195 kb on - strand at 73.232 kb on + strand at 73.232 kb on + strand at 73.232 kb on + strand at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.416 kb on + strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.417 kb on - strand, within MPMX19_05394 at 73.530 kb on + strand, within MPMX19_05394 at 73.531 kb on - strand, within MPMX19_05394 at 73.531 kb on - strand, within MPMX19_05394 at 73.531 kb on - strand, within MPMX19_05394 at 73.617 kb on + strand, within MPMX19_05394 at 73.617 kb on + strand, within MPMX19_05394 at 73.617 kb on + strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.618 kb on - strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.716 kb on + strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.717 kb on - strand, within MPMX19_05394 at 73.857 kb on + strand, within MPMX19_05394 at 73.857 kb on + strand, within MPMX19_05394 at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.634 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 72,614 - MPMX19_05393 0.46 +0.6 72,614 - MPMX19_05393 0.46 +0.1 72,614 - MPMX19_05393 0.46 +1.6 72,892 + MPMX19_05393 0.75 +0.6 72,893 - MPMX19_05393 0.75 +1.3 73,022 + MPMX19_05393 0.89 -0.1 73,023 - MPMX19_05393 0.89 -0.8 73,023 - MPMX19_05393 0.89 +0.3 73,039 + +0.1 73,039 + +0.8 73,194 + -1.5 73,194 + +0.1 73,194 + -0.6 73,194 + -0.2 73,194 + -0.3 73,194 + +0.6 73,194 + +0.8 73,194 + -0.6 73,194 + -1.8 73,194 + -1.7 73,195 - -0.1 73,195 - +1.9 73,195 - -0.3 73,195 - +0.6 73,195 - -0.4 73,195 - -1.7 73,195 - -1.2 73,195 - -0.8 73,195 - +1.1 73,195 - -0.5 73,195 - +0.4 73,195 - +0.1 73,232 + +0.8 73,232 + -0.2 73,232 + -1.2 73,416 + MPMX19_05394 0.10 -0.6 73,416 + MPMX19_05394 0.10 -0.1 73,416 + MPMX19_05394 0.10 -1.2 73,416 + MPMX19_05394 0.10 -1.9 73,416 + MPMX19_05394 0.10 +0.6 73,416 + MPMX19_05394 0.10 +0.6 73,416 + MPMX19_05394 0.10 +0.8 73,416 + MPMX19_05394 0.10 -1.5 73,416 + MPMX19_05394 0.10 +0.9 73,416 + MPMX19_05394 0.10 -0.7 73,416 + MPMX19_05394 0.10 +2.0 73,416 + MPMX19_05394 0.10 -1.7 73,416 + MPMX19_05394 0.10 -2.0 73,416 + MPMX19_05394 0.10 -0.4 73,416 + MPMX19_05394 0.10 +0.1 73,416 + MPMX19_05394 0.10 +1.6 73,416 + MPMX19_05394 0.10 -1.4 73,416 + MPMX19_05394 0.10 -0.4 73,416 + MPMX19_05394 0.10 -1.5 73,416 + MPMX19_05394 0.10 -1.2 73,417 - MPMX19_05394 0.10 -0.5 73,417 - MPMX19_05394 0.10 -1.7 73,417 - MPMX19_05394 0.10 -0.9 73,417 - MPMX19_05394 0.10 +1.3 73,417 - MPMX19_05394 0.10 +1.6 73,417 - MPMX19_05394 0.10 +0.4 73,417 - MPMX19_05394 0.10 -1.7 73,417 - MPMX19_05394 0.10 -0.5 73,417 - MPMX19_05394 0.10 -0.8 73,417 - MPMX19_05394 0.10 +0.5 73,417 - MPMX19_05394 0.10 -1.2 73,530 + MPMX19_05394 0.24 -0.2 73,531 - MPMX19_05394 0.24 +0.0 73,531 - MPMX19_05394 0.24 +0.6 73,531 - MPMX19_05394 0.24 +0.1 73,617 + MPMX19_05394 0.35 -1.1 73,617 + MPMX19_05394 0.35 -0.4 73,617 + MPMX19_05394 0.35 -1.2 73,618 - MPMX19_05394 0.35 +0.8 73,618 - MPMX19_05394 0.35 -1.6 73,618 - MPMX19_05394 0.35 +1.0 73,618 - MPMX19_05394 0.35 -2.1 73,618 - MPMX19_05394 0.35 -0.7 73,618 - MPMX19_05394 0.35 +1.9 73,618 - MPMX19_05394 0.35 -0.4 73,618 - MPMX19_05394 0.35 +0.8 73,716 + MPMX19_05394 0.47 -0.9 73,716 + MPMX19_05394 0.47 -1.8 73,716 + MPMX19_05394 0.47 -0.7 73,716 + MPMX19_05394 0.47 -1.5 73,716 + MPMX19_05394 0.47 -0.4 73,716 + MPMX19_05394 0.47 +1.6 73,716 + MPMX19_05394 0.47 +0.4 73,716 + MPMX19_05394 0.47 -0.4 73,716 + MPMX19_05394 0.47 -0.3 73,716 + MPMX19_05394 0.47 -0.7 73,716 + MPMX19_05394 0.47 -1.7 73,717 - MPMX19_05394 0.48 -0.8 73,717 - MPMX19_05394 0.48 +1.1 73,717 - MPMX19_05394 0.48 -1.0 73,717 - MPMX19_05394 0.48 +0.1 73,717 - MPMX19_05394 0.48 -0.7 73,717 - MPMX19_05394 0.48 +0.8 73,717 - MPMX19_05394 0.48 -0.9 73,857 + MPMX19_05394 0.65 +0.1 73,857 + MPMX19_05394 0.65 -0.4 74,141 + +0.3 74,141 + -1.0 74,141 + -0.9 74,141 + +0.1 74,141 + -1.5 74,141 + +0.5 74,141 + +0.3 74,141 + -2.2 74,141 + -0.5 74,141 + -0.2 74,141 + -0.6 74,141 + -0.4 74,141 + -2.1 74,141 + -0.8 74,141 + -2.9 74,141 + -0.9 74,141 + -0.3 74,141 + -1.3 74,141 + +0.9 74,142 - +0.1 74,142 - -0.9 74,142 - -0.7 74,142 - -1.5 74,142 - +0.1 74,142 - +0.4 74,142 - -2.8 74,142 - -0.6 74,142 - +0.5 74,142 - +1.2 74,142 - +0.3 74,142 - -0.7 74,142 - +0.2 74,142 - -0.5 74,142 - +0.6 74,142 - -1.4 74,142 - +0.1 74,142 - +0.4 74,142 - -2.3 74,142 - +0.6 74,331 + -1.4 74,331 + -0.3 74,331 + +0.9 74,331 + +0.2 74,331 + -0.6 74,331 + -2.7 74,332 - +0.7 74,332 - -0.7 74,332 - +0.7 74,332 - -0.9 74,361 + +0.1 74,361 + +0.1 74,361 + -2.1 74,361 + +1.2 74,361 + +0.3 74,362 - -0.7 74,362 - -0.1 74,362 - -0.3 74,362 - -1.2 74,362 - -1.4 74,363 + +1.1 74,363 + +1.3 74,363 + -0.2 74,363 + -0.1 74,363 + -0.5 74,363 + +0.0 74,363 + -1.4 74,363 + +0.3 74,363 + +0.5 74,363 + -2.1 74,364 - -0.4 74,364 - +1.0 74,364 - +0.1 74,364 - +0.2 74,364 - -0.9 74,364 - -1.1 74,364 - -1.6 74,364 - +0.8 74,364 - -0.1 74,364 - -0.9 74,364 - -1.6 74,364 - -0.3 74,364 - +1.2 74,364 - -0.5 74,364 - -0.1 74,364 - -0.4 74,364 - -0.8 74,364 - -0.9 74,502 + MPMX19_05395 0.26 -1.2 74,502 + MPMX19_05395 0.26 -0.4 74,502 + MPMX19_05395 0.26 +0.9 74,502 + MPMX19_05395 0.26 -0.8 74,502 + MPMX19_05395 0.26 +0.0 74,502 + MPMX19_05395 0.26 +1.4 74,502 + MPMX19_05395 0.26 -0.6 74,502 + MPMX19_05395 0.26 +0.6 74,502 + MPMX19_05395 0.26 -2.4 74,502 + MPMX19_05395 0.26 -0.2 74,502 + MPMX19_05395 0.26 -1.7 74,502 + MPMX19_05395 0.26 -0.0 74,503 - MPMX19_05395 0.26 -0.9 74,503 - MPMX19_05395 0.26 -0.2 74,503 - MPMX19_05395 0.26 +1.3 74,503 - MPMX19_05395 0.26 -0.4 74,503 - MPMX19_05395 0.26 -0.1 74,503 - MPMX19_05395 0.26 +0.4 74,503 - MPMX19_05395 0.26 -0.5 74,503 - MPMX19_05395 0.26 -1.8 74,503 - MPMX19_05395 0.26 -0.4 74,503 - MPMX19_05395 0.26 +0.4 74,503 - MPMX19_05395 0.26 -0.1 74,578 + MPMX19_05395 0.37 -0.4 74,578 + MPMX19_05395 0.37 +0.7 74,578 + MPMX19_05395 0.37 -0.2 74,578 + MPMX19_05395 0.37 -1.1 74,578 + MPMX19_05395 0.37 +0.8 74,578 + MPMX19_05395 0.37 +0.1 74,578 + MPMX19_05395 0.37 +0.4 74,579 - MPMX19_05395 0.38 -0.7 74,579 - MPMX19_05395 0.38 -0.1 74,579 - MPMX19_05395 0.38 +1.1 74,579 - MPMX19_05395 0.38 -1.0 74,579 - MPMX19_05395 0.38 +0.9 74,634 + MPMX19_05395 0.46 +0.4 74,733 + MPMX19_05395 0.60 -0.4 74,733 + MPMX19_05395 0.60 -0.6 74,733 + MPMX19_05395 0.60 +0.1 74,733 + MPMX19_05395 0.60 -0.4 74,733 + MPMX19_05395 0.60 -0.5 74,733 + MPMX19_05395 0.60 +0.3 74,734 - MPMX19_05395 0.61 -1.2 74,734 - MPMX19_05395 0.61 -1.3 74,734 - MPMX19_05395 0.61 -1.2 74,734 - MPMX19_05395 0.61 -0.1 74,734 - MPMX19_05395 0.61 +0.8 74,734 - MPMX19_05395 0.61 +0.3 74,734 - MPMX19_05395 0.61 -0.8 74,895 + MPMX19_05395 0.84 -1.6 74,895 + MPMX19_05395 0.84 -1.7 74,895 + MPMX19_05395 0.84 +2.0 74,895 + MPMX19_05395 0.84 -0.4 74,896 - MPMX19_05395 0.85 -1.2 74,896 - MPMX19_05395 0.85 +0.2 74,896 - MPMX19_05395 0.85 -0.0 74,896 - MPMX19_05395 0.85 +0.6 74,896 - MPMX19_05395 0.85 -0.2 74,896 - MPMX19_05395 0.85 +0.6 74,896 - MPMX19_05395 0.85 -0.6 74,916 + MPMX19_05395 0.88 -0.4 74,916 + MPMX19_05395 0.88 -0.7 74,916 + MPMX19_05395 0.88 -1.3 74,916 + MPMX19_05395 0.88 -1.4 74,916 + MPMX19_05395 0.88 +0.1 74,917 - MPMX19_05395 0.88 -0.0 74,917 - MPMX19_05395 0.88 -1.1 74,917 - MPMX19_05395 0.88 -2.1
Or see this region's nucleotide sequence