Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05376 and MPMX19_05377 are separated by 140 nucleotides MPMX19_05377 and MPMX19_05378 are separated by 240 nucleotides
MPMX19_05376: MPMX19_05376 - hypothetical protein, at 49,206 to 49,976
_05376
MPMX19_05377: MPMX19_05377 - hypothetical protein, at 50,117 to 50,806
_05377
MPMX19_05378: MPMX19_05378 - hypothetical protein, at 51,047 to 52,564
_05378
Position (kb) 50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 49.229 kb on + strand at 49.229 kb on + strand at 49.229 kb on + strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.230 kb on - strand at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.614 kb on + strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 49.615 kb on - strand, within MPMX19_05376 at 50.017 kb on + strand at 50.017 kb on + strand at 50.018 kb on - strand at 50.018 kb on - strand at 50.018 kb on - strand at 50.018 kb on - strand at 50.103 kb on + strand at 50.103 kb on + strand at 50.103 kb on + strand at 50.104 kb on - strand at 50.179 kb on - strand at 50.202 kb on + strand, within MPMX19_05377 at 50.202 kb on + strand, within MPMX19_05377 at 50.202 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.208 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.278 kb on + strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.279 kb on - strand, within MPMX19_05377 at 50.773 kb on + strand at 50.773 kb on + strand at 50.774 kb on - strand at 50.774 kb on - strand at 50.774 kb on - strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.788 kb on + strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.789 kb on - strand at 50.849 kb on + strand at 50.850 kb on - strand at 50.856 kb on + strand at 50.856 kb on + strand at 50.856 kb on + strand at 50.857 kb on - strand at 50.857 kb on - strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.929 kb on + strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 50.930 kb on - strand at 51.053 kb on + strand at 51.054 kb on - strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.138 kb on + strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.139 kb on - strand at 51.230 kb on - strand, within MPMX19_05378 at 51.278 kb on + strand, within MPMX19_05378 at 51.278 kb on + strand, within MPMX19_05378 at 51.279 kb on - strand, within MPMX19_05378 at 51.279 kb on - strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.462 kb on + strand, within MPMX19_05378 at 51.463 kb on + strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.463 kb on - strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.774 kb on + strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378 at 51.775 kb on - strand, within MPMX19_05378
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 49,229 + -0.5 49,229 + +0.1 49,229 + -2.2 49,230 - -2.4 49,230 - -0.4 49,230 - +0.4 49,230 - -0.2 49,614 + MPMX19_05376 0.53 +0.1 49,614 + MPMX19_05376 0.53 -1.7 49,614 + MPMX19_05376 0.53 -0.1 49,614 + MPMX19_05376 0.53 -0.3 49,614 + MPMX19_05376 0.53 -0.4 49,614 + MPMX19_05376 0.53 +0.3 49,614 + MPMX19_05376 0.53 -0.9 49,614 + MPMX19_05376 0.53 -0.1 49,614 + MPMX19_05376 0.53 -0.4 49,615 - MPMX19_05376 0.53 -1.7 49,615 - MPMX19_05376 0.53 -0.5 49,615 - MPMX19_05376 0.53 -1.1 49,615 - MPMX19_05376 0.53 -1.3 49,615 - MPMX19_05376 0.53 -0.1 49,615 - MPMX19_05376 0.53 +0.4 49,615 - MPMX19_05376 0.53 -1.6 49,615 - MPMX19_05376 0.53 -0.2 49,615 - MPMX19_05376 0.53 +0.2 49,615 - MPMX19_05376 0.53 +0.3 49,615 - MPMX19_05376 0.53 -0.2 50,017 + -0.1 50,017 + +0.4 50,018 - +0.6 50,018 - -0.3 50,018 - -0.4 50,018 - -0.9 50,103 + +0.3 50,103 + -2.2 50,103 + +1.5 50,104 - +0.1 50,179 - -0.7 50,202 + MPMX19_05377 0.12 +0.5 50,202 + MPMX19_05377 0.12 -0.4 50,202 + MPMX19_05377 0.12 -0.5 50,208 + MPMX19_05377 0.13 +0.1 50,208 + MPMX19_05377 0.13 -0.5 50,208 + MPMX19_05377 0.13 +0.3 50,208 + MPMX19_05377 0.13 -0.4 50,208 + MPMX19_05377 0.13 +0.1 50,208 + MPMX19_05377 0.13 -1.2 50,208 + MPMX19_05377 0.13 -1.1 50,278 + MPMX19_05377 0.23 -0.0 50,278 + MPMX19_05377 0.23 -2.2 50,278 + MPMX19_05377 0.23 +0.3 50,278 + MPMX19_05377 0.23 -0.2 50,278 + MPMX19_05377 0.23 -3.2 50,278 + MPMX19_05377 0.23 -0.7 50,278 + MPMX19_05377 0.23 -1.2 50,278 + MPMX19_05377 0.23 -1.4 50,278 + MPMX19_05377 0.23 +0.3 50,278 + MPMX19_05377 0.23 -1.7 50,278 + MPMX19_05377 0.23 +0.6 50,278 + MPMX19_05377 0.23 +0.4 50,278 + MPMX19_05377 0.23 -1.4 50,279 - MPMX19_05377 0.23 -0.6 50,279 - MPMX19_05377 0.23 -1.6 50,279 - MPMX19_05377 0.23 -2.1 50,279 - MPMX19_05377 0.23 -1.0 50,279 - MPMX19_05377 0.23 -2.2 50,279 - MPMX19_05377 0.23 -1.7 50,279 - MPMX19_05377 0.23 +0.1 50,279 - MPMX19_05377 0.23 +0.5 50,279 - MPMX19_05377 0.23 -0.8 50,279 - MPMX19_05377 0.23 -1.4 50,279 - MPMX19_05377 0.23 +0.2 50,773 + -1.6 50,773 + -0.2 50,774 - +0.8 50,774 - +0.3 50,774 - +0.5 50,788 + +0.4 50,788 + -1.2 50,788 + -0.5 50,788 + -0.7 50,789 - +0.3 50,789 - -0.8 50,789 - +0.6 50,789 - -0.7 50,789 - -0.5 50,789 - -2.7 50,849 + +0.1 50,850 - +0.3 50,856 + +0.1 50,856 + +1.1 50,856 + +0.5 50,857 - -1.3 50,857 - -1.4 50,929 + -2.4 50,929 + -0.7 50,929 + -0.6 50,929 + -0.5 50,929 + -0.4 50,930 - -0.0 50,930 - -1.8 50,930 - +0.2 50,930 - -0.4 50,930 - +0.2 51,053 + +0.4 51,054 - +0.2 51,138 + -1.2 51,138 + -2.2 51,138 + -0.4 51,138 + +1.9 51,138 + -1.5 51,138 + -1.1 51,138 + -0.7 51,138 + -1.4 51,138 + -0.2 51,138 + +0.1 51,138 + -1.5 51,138 + +0.4 51,138 + -0.7 51,138 + -2.4 51,138 + -0.5 51,138 + +1.6 51,138 + -0.1 51,138 + +1.3 51,138 + +0.2 51,138 + -0.1 51,138 + +0.3 51,138 + -0.7 51,138 + -1.1 51,138 + -0.0 51,139 - +1.2 51,139 - +0.3 51,139 - -0.9 51,139 - +0.1 51,139 - -0.4 51,139 - -2.4 51,139 - -0.9 51,139 - -1.0 51,139 - -0.3 51,139 - +1.5 51,139 - -1.4 51,139 - -0.2 51,139 - +0.1 51,139 - -0.5 51,230 - MPMX19_05378 0.12 +0.5 51,278 + MPMX19_05378 0.15 -1.2 51,278 + MPMX19_05378 0.15 -2.3 51,279 - MPMX19_05378 0.15 -0.5 51,279 - MPMX19_05378 0.15 -0.3 51,462 + MPMX19_05378 0.27 -0.4 51,462 + MPMX19_05378 0.27 -1.5 51,462 + MPMX19_05378 0.27 -0.5 51,462 + MPMX19_05378 0.27 -0.4 51,462 + MPMX19_05378 0.27 -0.9 51,462 + MPMX19_05378 0.27 -0.5 51,462 + MPMX19_05378 0.27 -1.7 51,462 + MPMX19_05378 0.27 -0.9 51,462 + MPMX19_05378 0.27 +1.3 51,463 + MPMX19_05378 0.27 +0.3 51,463 - MPMX19_05378 0.27 -0.7 51,463 - MPMX19_05378 0.27 -0.7 51,463 - MPMX19_05378 0.27 -0.2 51,463 - MPMX19_05378 0.27 -1.7 51,463 - MPMX19_05378 0.27 +0.2 51,463 - MPMX19_05378 0.27 -0.4 51,774 + MPMX19_05378 0.48 -0.2 51,774 + MPMX19_05378 0.48 -2.3 51,774 + MPMX19_05378 0.48 +0.3 51,774 + MPMX19_05378 0.48 -0.5 51,774 + MPMX19_05378 0.48 +0.2 51,775 - MPMX19_05378 0.48 -2.4 51,775 - MPMX19_05378 0.48 -1.8 51,775 - MPMX19_05378 0.48 +0.4
Or see this region's nucleotide sequence