Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05279 and MPMX19_05280 are separated by 311 nucleotides MPMX19_05280 and MPMX19_05281 are separated by 30 nucleotides MPMX19_05281 and MPMX19_05282 are separated by 17 nucleotides
MPMX19_05279: MPMX19_05279 - Copper-containing nitrite reductase, at 812,278 to 813,345
_05279
MPMX19_05280: MPMX19_05280 - hypothetical protein, at 813,657 to 814,676
_05280
MPMX19_05281: MPMX19_05281 - hypothetical protein, at 814,707 to 815,273
_05281
MPMX19_05282: MPMX19_05282 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 815,291 to 816,349
_05282
Position (kb) 813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 812.682 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.743 kb on + strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.744 kb on - strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.749 kb on + strand, within MPMX19_05279 at 812.750 kb on - strand, within MPMX19_05279 at 812.750 kb on - strand, within MPMX19_05279 at 812.750 kb on - strand, within MPMX19_05279 at 812.750 kb on - strand, within MPMX19_05279 at 812.750 kb on - strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.797 kb on + strand, within MPMX19_05279 at 812.798 kb on - strand, within MPMX19_05279 at 812.798 kb on - strand, within MPMX19_05279 at 812.798 kb on - strand, within MPMX19_05279 at 812.798 kb on - strand, within MPMX19_05279 at 812.798 kb on - strand, within MPMX19_05279 at 812.798 kb on - strand, within MPMX19_05279 at 812.854 kb on + strand, within MPMX19_05279 at 812.854 kb on + strand, within MPMX19_05279 at 812.875 kb on + strand, within MPMX19_05279 at 812.876 kb on - strand, within MPMX19_05279 at 812.876 kb on - strand, within MPMX19_05279 at 812.917 kb on + strand, within MPMX19_05279 at 812.917 kb on + strand, within MPMX19_05279 at 812.917 kb on + strand, within MPMX19_05279 at 812.917 kb on + strand, within MPMX19_05279 at 812.918 kb on - strand, within MPMX19_05279 at 812.918 kb on - strand, within MPMX19_05279 at 812.918 kb on - strand, within MPMX19_05279 at 812.918 kb on - strand, within MPMX19_05279 at 812.918 kb on - strand, within MPMX19_05279 at 812.918 kb on - strand, within MPMX19_05279 at 812.947 kb on + strand, within MPMX19_05279 at 812.948 kb on - strand, within MPMX19_05279 at 812.948 kb on - strand, within MPMX19_05279 at 812.948 kb on - strand, within MPMX19_05279 at 812.948 kb on - strand, within MPMX19_05279 at 813.097 kb on + strand, within MPMX19_05279 at 813.097 kb on + strand, within MPMX19_05279 at 813.097 kb on + strand, within MPMX19_05279 at 813.097 kb on + strand, within MPMX19_05279 at 813.098 kb on - strand, within MPMX19_05279 at 813.098 kb on - strand, within MPMX19_05279 at 813.098 kb on - strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.205 kb on + strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.206 kb on - strand, within MPMX19_05279 at 813.326 kb on + strand at 813.353 kb on + strand at 813.353 kb on + strand at 813.354 kb on - strand at 813.400 kb on - strand at 813.483 kb on - strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.599 kb on + strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.600 kb on - strand at 813.601 kb on + strand at 813.601 kb on + strand at 813.601 kb on + strand at 813.601 kb on + strand at 813.601 kb on + strand at 813.602 kb on - strand at 813.602 kb on - strand at 813.602 kb on - strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.603 kb on + strand at 813.604 kb on - strand at 813.604 kb on - strand at 813.604 kb on - strand at 813.658 kb on + strand at 813.823 kb on + strand, within MPMX19_05280 at 813.823 kb on + strand, within MPMX19_05280 at 813.823 kb on + strand, within MPMX19_05280 at 813.823 kb on + strand, within MPMX19_05280 at 813.823 kb on + strand, within MPMX19_05280 at 813.823 kb on + strand, within MPMX19_05280 at 813.823 kb on + strand, within MPMX19_05280 at 813.824 kb on - strand, within MPMX19_05280 at 813.824 kb on - strand, within MPMX19_05280 at 813.824 kb on - strand, within MPMX19_05280 at 813.824 kb on - strand, within MPMX19_05280 at 813.824 kb on - strand, within MPMX19_05280 at 813.824 kb on - strand, within MPMX19_05280 at 813.896 kb on - strand, within MPMX19_05280 at 813.896 kb on - strand, within MPMX19_05280 at 813.896 kb on - strand, within MPMX19_05280 at 814.088 kb on + strand, within MPMX19_05280 at 814.088 kb on + strand, within MPMX19_05280 at 814.198 kb on + strand, within MPMX19_05280 at 814.198 kb on + strand, within MPMX19_05280 at 814.199 kb on - strand, within MPMX19_05280 at 814.199 kb on - strand, within MPMX19_05280 at 814.199 kb on - strand, within MPMX19_05280 at 814.303 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.318 kb on + strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.319 kb on - strand, within MPMX19_05280 at 814.579 kb on + strand at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.912 kb on + strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 814.913 kb on - strand, within MPMX19_05281 at 815.140 kb on + strand, within MPMX19_05281 at 815.141 kb on - strand, within MPMX19_05281
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 812,682 + MPMX19_05279 0.38 -0.3 812,743 + MPMX19_05279 0.44 +1.5 812,743 + MPMX19_05279 0.44 -0.2 812,743 + MPMX19_05279 0.44 +0.1 812,743 + MPMX19_05279 0.44 -0.1 812,743 + MPMX19_05279 0.44 -0.5 812,743 + MPMX19_05279 0.44 +0.7 812,743 + MPMX19_05279 0.44 -1.5 812,743 + MPMX19_05279 0.44 +0.7 812,743 + MPMX19_05279 0.44 +0.6 812,743 + MPMX19_05279 0.44 -0.8 812,743 + MPMX19_05279 0.44 -1.8 812,744 - MPMX19_05279 0.44 +0.5 812,744 - MPMX19_05279 0.44 -0.6 812,744 - MPMX19_05279 0.44 -0.1 812,744 - MPMX19_05279 0.44 -2.2 812,744 - MPMX19_05279 0.44 +0.5 812,744 - MPMX19_05279 0.44 +0.1 812,744 - MPMX19_05279 0.44 +0.0 812,744 - MPMX19_05279 0.44 -0.0 812,744 - MPMX19_05279 0.44 +0.9 812,744 - MPMX19_05279 0.44 +0.2 812,744 - MPMX19_05279 0.44 -0.2 812,744 - MPMX19_05279 0.44 -0.8 812,749 + MPMX19_05279 0.44 -0.1 812,749 + MPMX19_05279 0.44 +0.4 812,749 + MPMX19_05279 0.44 -0.5 812,749 + MPMX19_05279 0.44 +0.9 812,749 + MPMX19_05279 0.44 -0.1 812,749 + MPMX19_05279 0.44 +0.5 812,749 + MPMX19_05279 0.44 -1.0 812,749 + MPMX19_05279 0.44 -0.2 812,749 + MPMX19_05279 0.44 -1.3 812,749 + MPMX19_05279 0.44 +1.2 812,749 + MPMX19_05279 0.44 -1.1 812,750 - MPMX19_05279 0.44 -1.3 812,750 - MPMX19_05279 0.44 +0.3 812,750 - MPMX19_05279 0.44 +0.7 812,750 - MPMX19_05279 0.44 -0.5 812,750 - MPMX19_05279 0.44 -0.2 812,797 + MPMX19_05279 0.49 -0.5 812,797 + MPMX19_05279 0.49 -0.8 812,797 + MPMX19_05279 0.49 -1.2 812,797 + MPMX19_05279 0.49 +0.2 812,797 + MPMX19_05279 0.49 -2.0 812,797 + MPMX19_05279 0.49 +0.5 812,797 + MPMX19_05279 0.49 -0.1 812,797 + MPMX19_05279 0.49 -0.8 812,797 + MPMX19_05279 0.49 -0.4 812,798 - MPMX19_05279 0.49 -1.7 812,798 - MPMX19_05279 0.49 -0.3 812,798 - MPMX19_05279 0.49 +0.7 812,798 - MPMX19_05279 0.49 +1.0 812,798 - MPMX19_05279 0.49 -0.7 812,798 - MPMX19_05279 0.49 -0.7 812,854 + MPMX19_05279 0.54 -2.4 812,854 + MPMX19_05279 0.54 -2.3 812,875 + MPMX19_05279 0.56 -0.2 812,876 - MPMX19_05279 0.56 +0.1 812,876 - MPMX19_05279 0.56 -0.8 812,917 + MPMX19_05279 0.60 +0.5 812,917 + MPMX19_05279 0.60 -0.0 812,917 + MPMX19_05279 0.60 -0.7 812,917 + MPMX19_05279 0.60 -0.7 812,918 - MPMX19_05279 0.60 -1.7 812,918 - MPMX19_05279 0.60 -0.3 812,918 - MPMX19_05279 0.60 -0.5 812,918 - MPMX19_05279 0.60 -1.3 812,918 - MPMX19_05279 0.60 +0.1 812,918 - MPMX19_05279 0.60 -0.1 812,947 + MPMX19_05279 0.63 -0.8 812,948 - MPMX19_05279 0.63 +0.4 812,948 - MPMX19_05279 0.63 -1.3 812,948 - MPMX19_05279 0.63 +0.9 812,948 - MPMX19_05279 0.63 -0.5 813,097 + MPMX19_05279 0.77 -0.1 813,097 + MPMX19_05279 0.77 -0.9 813,097 + MPMX19_05279 0.77 -3.1 813,097 + MPMX19_05279 0.77 +0.2 813,098 - MPMX19_05279 0.77 -0.9 813,098 - MPMX19_05279 0.77 -0.5 813,098 - MPMX19_05279 0.77 +0.6 813,205 + MPMX19_05279 0.87 -1.7 813,205 + MPMX19_05279 0.87 +0.7 813,205 + MPMX19_05279 0.87 -2.3 813,205 + MPMX19_05279 0.87 +0.7 813,205 + MPMX19_05279 0.87 -0.5 813,205 + MPMX19_05279 0.87 -0.4 813,205 + MPMX19_05279 0.87 -1.3 813,205 + MPMX19_05279 0.87 -1.1 813,205 + MPMX19_05279 0.87 +0.3 813,205 + MPMX19_05279 0.87 +0.4 813,205 + MPMX19_05279 0.87 +0.6 813,205 + MPMX19_05279 0.87 -0.2 813,205 + MPMX19_05279 0.87 -0.2 813,206 - MPMX19_05279 0.87 -1.3 813,206 - MPMX19_05279 0.87 -0.5 813,206 - MPMX19_05279 0.87 -1.0 813,206 - MPMX19_05279 0.87 -1.8 813,206 - MPMX19_05279 0.87 +0.1 813,206 - MPMX19_05279 0.87 -1.3 813,206 - MPMX19_05279 0.87 -1.5 813,326 + +0.8 813,353 + -1.4 813,353 + -0.2 813,354 - +1.9 813,400 - -0.4 813,483 - -0.0 813,599 + -1.0 813,599 + -0.9 813,599 + +1.0 813,599 + +0.9 813,599 + +0.9 813,599 + +0.7 813,599 + +0.1 813,599 + -0.4 813,599 + -0.4 813,599 + -1.0 813,599 + -1.5 813,599 + -2.0 813,599 + +1.9 813,599 + +0.1 813,600 - -0.2 813,600 - -1.0 813,600 - +0.4 813,600 - +0.9 813,600 - -0.3 813,600 - +0.3 813,600 - +1.5 813,600 - +0.1 813,600 - +0.6 813,600 - +0.9 813,600 - -0.2 813,600 - -0.9 813,600 - +0.2 813,600 - +0.1 813,600 - +0.4 813,600 - +0.9 813,600 - -2.0 813,600 - -0.7 813,600 - +0.1 813,600 - +0.0 813,600 - -0.6 813,601 + +1.1 813,601 + +0.3 813,601 + -1.1 813,601 + -1.1 813,601 + -1.3 813,602 - -2.3 813,602 - -1.7 813,602 - -0.1 813,603 + +0.7 813,603 + -0.6 813,603 + -1.1 813,603 + +1.8 813,603 + -0.1 813,603 + -0.6 813,603 + -1.4 813,603 + -1.5 813,603 + -0.3 813,603 + -0.8 813,604 - +0.9 813,604 - -1.5 813,604 - -1.1 813,658 + -0.3 813,823 + MPMX19_05280 0.16 -1.3 813,823 + MPMX19_05280 0.16 +0.7 813,823 + MPMX19_05280 0.16 +0.5 813,823 + MPMX19_05280 0.16 +0.3 813,823 + MPMX19_05280 0.16 -0.1 813,823 + MPMX19_05280 0.16 +0.7 813,823 + MPMX19_05280 0.16 -0.1 813,824 - MPMX19_05280 0.16 +0.5 813,824 - MPMX19_05280 0.16 +1.5 813,824 - MPMX19_05280 0.16 -0.8 813,824 - MPMX19_05280 0.16 +0.1 813,824 - MPMX19_05280 0.16 +0.5 813,824 - MPMX19_05280 0.16 -0.1 813,896 - MPMX19_05280 0.23 -0.7 813,896 - MPMX19_05280 0.23 -1.6 813,896 - MPMX19_05280 0.23 +0.2 814,088 + MPMX19_05280 0.42 +1.9 814,088 + MPMX19_05280 0.42 +0.4 814,198 + MPMX19_05280 0.53 -1.3 814,198 + MPMX19_05280 0.53 +0.4 814,199 - MPMX19_05280 0.53 -1.4 814,199 - MPMX19_05280 0.53 -1.0 814,199 - MPMX19_05280 0.53 +0.1 814,303 + MPMX19_05280 0.63 -0.8 814,318 + MPMX19_05280 0.65 +1.4 814,318 + MPMX19_05280 0.65 +0.8 814,318 + MPMX19_05280 0.65 -0.1 814,318 + MPMX19_05280 0.65 +0.5 814,318 + MPMX19_05280 0.65 +1.9 814,318 + MPMX19_05280 0.65 +1.1 814,318 + MPMX19_05280 0.65 +0.4 814,318 + MPMX19_05280 0.65 +0.6 814,318 + MPMX19_05280 0.65 +1.4 814,318 + MPMX19_05280 0.65 +1.1 814,318 + MPMX19_05280 0.65 -1.7 814,319 - MPMX19_05280 0.65 +1.1 814,319 - MPMX19_05280 0.65 -1.7 814,319 - MPMX19_05280 0.65 +1.0 814,319 - MPMX19_05280 0.65 +1.1 814,319 - MPMX19_05280 0.65 +0.5 814,319 - MPMX19_05280 0.65 +0.2 814,319 - MPMX19_05280 0.65 -0.5 814,579 + +1.0 814,912 + MPMX19_05281 0.36 +0.2 814,912 + MPMX19_05281 0.36 +1.2 814,912 + MPMX19_05281 0.36 +0.1 814,912 + MPMX19_05281 0.36 -0.4 814,912 + MPMX19_05281 0.36 +0.3 814,912 + MPMX19_05281 0.36 +0.7 814,912 + MPMX19_05281 0.36 +0.3 814,912 + MPMX19_05281 0.36 +0.1 814,913 - MPMX19_05281 0.36 -0.8 814,913 - MPMX19_05281 0.36 +0.0 814,913 - MPMX19_05281 0.36 -0.8 814,913 - MPMX19_05281 0.36 -0.1 814,913 - MPMX19_05281 0.36 -0.5 814,913 - MPMX19_05281 0.36 +0.1 814,913 - MPMX19_05281 0.36 +1.2 814,913 - MPMX19_05281 0.36 -0.1 814,913 - MPMX19_05281 0.36 +0.0 814,913 - MPMX19_05281 0.36 +0.4 814,913 - MPMX19_05281 0.36 -2.0 814,913 - MPMX19_05281 0.36 +0.1 815,140 + MPMX19_05281 0.76 +0.2 815,141 - MPMX19_05281 0.77 -0.1
Or see this region's nucleotide sequence