Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05161 and MPMX19_05162 are separated by 550 nucleotides MPMX19_05162 and MPMX19_05163 are separated by 339 nucleotides
MPMX19_05161: MPMX19_05161 - hypothetical protein, at 661,395 to 661,529
_05161
MPMX19_05162: MPMX19_05162 - Ferrous-iron efflux pump FieF, at 662,080 to 663,501
_05162
MPMX19_05163: MPMX19_05163 - hypothetical protein, at 663,841 to 664,932
_05163
Position (kb) 662
663
664 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.153 kb on + strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.154 kb on - strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.157 kb on + strand at 661.158 kb on - strand at 661.158 kb on - strand at 661.158 kb on - strand at 661.278 kb on - strand at 661.278 kb on - strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.321 kb on + strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.322 kb on - strand at 661.396 kb on + strand at 661.548 kb on + strand at 661.666 kb on + strand at 661.666 kb on + strand at 661.667 kb on - strand at 661.667 kb on - strand at 661.701 kb on + strand at 661.703 kb on + strand at 661.708 kb on + strand at 661.710 kb on + strand at 661.710 kb on + strand at 661.769 kb on + strand at 661.824 kb on + strand at 661.825 kb on - strand at 661.928 kb on + strand at 661.928 kb on + strand at 661.928 kb on + strand at 661.936 kb on + strand at 661.937 kb on - strand at 661.937 kb on - strand at 661.937 kb on - strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.050 kb on + strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.051 kb on - strand at 662.284 kb on + strand, within MPMX19_05162 at 662.285 kb on - strand, within MPMX19_05162 at 662.285 kb on - strand, within MPMX19_05162 at 662.285 kb on - strand, within MPMX19_05162 at 662.362 kb on + strand, within MPMX19_05162 at 662.363 kb on - strand, within MPMX19_05162 at 662.458 kb on + strand, within MPMX19_05162 at 662.459 kb on - strand, within MPMX19_05162 at 662.459 kb on - strand, within MPMX19_05162 at 662.574 kb on - strand, within MPMX19_05162 at 662.740 kb on - strand, within MPMX19_05162 at 663.706 kb on + strand at 663.707 kb on - strand at 663.775 kb on + strand at 663.776 kb on - strand at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.054 kb on + strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.055 kb on - strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.465 kb on + strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.466 kb on - strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.467 kb on + strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163 at 664.468 kb on - strand, within MPMX19_05163
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 661,153 + -1.1 661,153 + -1.5 661,153 + +0.2 661,153 + -0.8 661,153 + -0.0 661,153 + +1.7 661,153 + +0.6 661,153 + +1.1 661,153 + -0.6 661,153 + -0.9 661,153 + -0.4 661,153 + -0.5 661,153 + -0.7 661,153 + -1.7 661,153 + +0.3 661,153 + +0.7 661,153 + +0.2 661,153 + +1.8 661,153 + -0.8 661,153 + -0.1 661,153 + +0.0 661,153 + -1.0 661,153 + -0.1 661,153 + -0.5 661,153 + -2.1 661,153 + -0.0 661,154 - -0.5 661,154 - -0.4 661,154 - +0.8 661,154 - +1.5 661,154 - -0.5 661,154 - -0.4 661,154 - +0.5 661,154 - -1.5 661,154 - +0.4 661,157 + +0.5 661,157 + -0.6 661,157 + -1.2 661,157 + -0.9 661,158 - -0.3 661,158 - -0.1 661,158 - +1.9 661,278 - -0.9 661,278 - -0.1 661,321 + +0.2 661,321 + -2.4 661,321 + -0.7 661,321 + -1.4 661,321 + -0.5 661,321 + -0.1 661,321 + -1.7 661,321 + -1.1 661,321 + -1.5 661,321 + -0.7 661,321 + -0.9 661,322 - +0.5 661,322 - -0.7 661,322 - +2.5 661,322 - -0.8 661,322 - -0.6 661,322 - -0.1 661,322 - +0.3 661,322 - -0.5 661,322 - +1.1 661,322 - -0.3 661,322 - -1.5 661,322 - +1.5 661,322 - -0.9 661,322 - -0.1 661,322 - -1.4 661,322 - +0.1 661,396 + -0.5 661,548 + -0.4 661,666 + -0.5 661,666 + -0.7 661,667 - -0.2 661,667 - +0.3 661,701 + +0.7 661,703 + -0.8 661,708 + -1.1 661,710 + +0.0 661,710 + +1.5 661,769 + -0.6 661,824 + +0.9 661,825 - -0.3 661,928 + +0.9 661,928 + -0.1 661,928 + -1.2 661,936 + -0.8 661,937 - -0.5 661,937 - -0.8 661,937 - -1.7 662,050 + +0.0 662,050 + -2.3 662,050 + -0.1 662,050 + +0.3 662,051 - -0.4 662,051 - -0.8 662,051 - -2.0 662,051 - -0.8 662,051 - +0.8 662,051 - -0.2 662,051 - +0.7 662,284 + MPMX19_05162 0.14 -0.3 662,285 - MPMX19_05162 0.14 -0.3 662,285 - MPMX19_05162 0.14 -0.7 662,285 - MPMX19_05162 0.14 -0.8 662,362 + MPMX19_05162 0.20 -3.1 662,363 - MPMX19_05162 0.20 -0.7 662,458 + MPMX19_05162 0.27 -1.3 662,459 - MPMX19_05162 0.27 -0.2 662,459 - MPMX19_05162 0.27 +0.3 662,574 - MPMX19_05162 0.35 -0.5 662,740 - MPMX19_05162 0.46 -1.0 663,706 + +0.0 663,707 - +0.3 663,775 + -0.1 663,776 - -1.7 664,054 + MPMX19_05163 0.20 -0.8 664,054 + MPMX19_05163 0.20 +0.0 664,054 + MPMX19_05163 0.20 -0.2 664,054 + MPMX19_05163 0.20 -2.1 664,054 + MPMX19_05163 0.20 -0.2 664,054 + MPMX19_05163 0.20 +0.1 664,054 + MPMX19_05163 0.20 -1.7 664,054 + MPMX19_05163 0.20 -1.1 664,055 - MPMX19_05163 0.20 -1.4 664,055 - MPMX19_05163 0.20 -0.5 664,055 - MPMX19_05163 0.20 -2.1 664,055 - MPMX19_05163 0.20 -1.0 664,055 - MPMX19_05163 0.20 -0.7 664,055 - MPMX19_05163 0.20 +0.0 664,055 - MPMX19_05163 0.20 +1.9 664,055 - MPMX19_05163 0.20 -0.1 664,055 - MPMX19_05163 0.20 +0.3 664,055 - MPMX19_05163 0.20 +1.0 664,055 - MPMX19_05163 0.20 -1.2 664,055 - MPMX19_05163 0.20 -2.7 664,055 - MPMX19_05163 0.20 -0.6 664,055 - MPMX19_05163 0.20 -2.0 664,465 + MPMX19_05163 0.57 -0.0 664,465 + MPMX19_05163 0.57 -0.8 664,465 + MPMX19_05163 0.57 -0.6 664,465 + MPMX19_05163 0.57 -1.4 664,465 + MPMX19_05163 0.57 -2.0 664,465 + MPMX19_05163 0.57 +0.5 664,465 + MPMX19_05163 0.57 -0.2 664,465 + MPMX19_05163 0.57 -2.0 664,465 + MPMX19_05163 0.57 -2.5 664,466 - MPMX19_05163 0.57 +0.1 664,466 - MPMX19_05163 0.57 -1.1 664,466 - MPMX19_05163 0.57 -0.4 664,466 - MPMX19_05163 0.57 -0.2 664,466 - MPMX19_05163 0.57 -1.5 664,466 - MPMX19_05163 0.57 -0.2 664,466 - MPMX19_05163 0.57 -1.5 664,466 - MPMX19_05163 0.57 +1.1 664,467 + MPMX19_05163 0.57 -0.6 664,467 + MPMX19_05163 0.57 -0.6 664,467 + MPMX19_05163 0.57 -0.5 664,467 + MPMX19_05163 0.57 +0.7 664,467 + MPMX19_05163 0.57 -0.3 664,468 - MPMX19_05163 0.57 -0.1 664,468 - MPMX19_05163 0.57 +0.2 664,468 - MPMX19_05163 0.57 -0.9 664,468 - MPMX19_05163 0.57 +1.5 664,468 - MPMX19_05163 0.57 +0.3
Or see this region's nucleotide sequence