Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05063 and MPMX19_05064 are separated by 174 nucleotides MPMX19_05064 and MPMX19_05065 are separated by 1 nucleotides MPMX19_05065 and MPMX19_05066 are separated by 25 nucleotides
MPMX19_05063: MPMX19_05063 - Histone deacetylase-like amidohydrolase, at 545,985 to 546,974
_05063
MPMX19_05064: MPMX19_05064 - Exodeoxyribonuclease 7 small subunit, at 547,149 to 547,427
_05064
MPMX19_05065: MPMX19_05065 - Farnesyl diphosphate synthase, at 547,429 to 548,331
_05065
MPMX19_05066: MPMX19_05066 - 1-deoxy-D-xylulose-5-phosphate synthase, at 548,357 to 550,270
_05066
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.612 kb on + strand, within MPMX19_05063 at 546.612 kb on + strand, within MPMX19_05063 at 546.613 kb on - strand, within MPMX19_05063 at 546.613 kb on - strand, within MPMX19_05063 at 546.649 kb on - strand, within MPMX19_05063 at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.913 kb on - strand at 546.913 kb on - strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 547.022 kb on - strand at 547.039 kb on + strand at 547.039 kb on + strand at 547.039 kb on + strand at 547.040 kb on - strand at 547.040 kb on - strand at 547.040 kb on - strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.302 kb on + strand, within MPMX19_05064 at 547.302 kb on + strand, within MPMX19_05064 at 547.381 kb on + strand, within MPMX19_05064 at 547.381 kb on + strand, within MPMX19_05064 at 547.434 kb on + strand at 547.434 kb on + strand at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.071 kb on + strand, within MPMX19_05065 at 548.286 kb on + strand at 548.286 kb on + strand at 548.286 kb on + strand at 548.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 546,585 + MPMX19_05063 0.61 -0.5 546,585 + MPMX19_05063 0.61 -0.0 546,585 + MPMX19_05063 0.61 +0.6 546,585 + MPMX19_05063 0.61 -1.1 546,585 + MPMX19_05063 0.61 +0.6 546,585 + MPMX19_05063 0.61 -0.2 546,585 + MPMX19_05063 0.61 +0.7 546,585 + MPMX19_05063 0.61 +1.6 546,585 + MPMX19_05063 0.61 -0.2 546,585 + MPMX19_05063 0.61 -0.8 546,585 + MPMX19_05063 0.61 +2.1 546,585 - MPMX19_05063 0.61 +1.4 546,586 - MPMX19_05063 0.61 -1.9 546,586 - MPMX19_05063 0.61 -0.8 546,586 - MPMX19_05063 0.61 -0.1 546,586 - MPMX19_05063 0.61 +0.4 546,586 - MPMX19_05063 0.61 -0.0 546,586 - MPMX19_05063 0.61 +0.3 546,586 - MPMX19_05063 0.61 +1.1 546,586 - MPMX19_05063 0.61 -0.0 546,612 + MPMX19_05063 0.63 +1.6 546,612 + MPMX19_05063 0.63 -0.2 546,613 - MPMX19_05063 0.63 -0.6 546,613 - MPMX19_05063 0.63 +0.2 546,649 - MPMX19_05063 0.67 -0.0 546,912 + -0.7 546,912 + -1.8 546,912 + -0.7 546,912 + -0.9 546,912 + +0.3 546,913 - -0.0 546,913 - +1.0 546,966 + +1.6 546,966 + -0.8 546,966 + -1.6 546,966 + -0.9 546,966 + -0.3 546,966 + -1.2 546,966 + -0.6 546,966 + -0.2 546,966 + -1.6 546,966 + -2.1 546,966 + -0.7 546,966 + -0.6 546,966 + -0.2 546,966 + -0.8 546,966 + -0.4 546,966 + -1.4 546,966 + -0.4 546,966 + -0.2 546,966 + -0.0 546,966 + -2.0 546,966 + -0.7 546,966 + +0.0 546,966 + -1.0 546,967 - -0.6 546,967 - -1.0 546,967 - -1.4 546,967 - -0.6 546,967 - -0.0 546,967 - -1.8 546,967 - -0.9 546,967 - +1.0 546,967 - +0.2 546,967 - -0.5 546,967 - +1.0 546,967 - -1.3 546,967 - -0.0 546,967 - -0.9 546,967 - -0.4 546,967 - -0.8 546,967 - -2.3 546,967 - -1.2 546,967 - -0.8 546,967 - +0.3 546,967 - -1.0 546,967 - +1.0 546,967 - -2.3 546,967 - -0.8 546,967 - -0.5 546,967 - +0.3 546,967 - -0.0 546,967 - +0.6 547,022 - -1.1 547,039 + -0.3 547,039 + +0.4 547,039 + +0.6 547,040 - +0.6 547,040 - -0.2 547,040 - -0.4 547,061 + -1.8 547,061 + -0.4 547,061 + +0.8 547,061 + -0.0 547,061 + -0.9 547,061 + -1.5 547,061 + -0.3 547,061 + -0.7 547,061 + +1.8 547,061 + -0.5 547,061 + +0.6 547,061 + +0.5 547,062 - -0.9 547,062 - +2.0 547,062 - +1.9 547,062 - -0.4 547,062 - -0.4 547,062 - -0.6 547,062 - +0.3 547,062 - +0.4 547,062 - +1.0 547,122 + -0.8 547,122 + -0.5 547,122 + -1.8 547,122 + -1.0 547,122 + -1.0 547,122 + -0.6 547,122 + -0.6 547,122 + -1.2 547,122 + -1.7 547,122 + -0.6 547,302 + MPMX19_05064 0.55 +1.9 547,302 + MPMX19_05064 0.55 +1.1 547,381 + MPMX19_05064 0.83 +3.1 547,381 + MPMX19_05064 0.83 -0.2 547,434 + -0.6 547,434 + +0.6 547,681 + MPMX19_05065 0.28 -1.1 547,681 + MPMX19_05065 0.28 -1.9 547,681 + MPMX19_05065 0.28 -1.0 547,681 + MPMX19_05065 0.28 -1.4 547,681 + MPMX19_05065 0.28 -0.0 548,071 + MPMX19_05065 0.71 +1.0 548,071 + MPMX19_05065 0.71 -1.8 548,071 + MPMX19_05065 0.71 -0.0 548,071 + MPMX19_05065 0.71 -0.0 548,071 + MPMX19_05065 0.71 -2.1 548,286 + +0.6 548,286 + +1.6 548,286 + +1.6 548,286 + +0.1
Or see this region's nucleotide sequence