Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04862 and MPMX19_04863 are separated by 18 nucleotides MPMX19_04863 and MPMX19_04864 are separated by 76 nucleotides MPMX19_04864 and MPMX19_04865 overlap by 1 nucleotides MPMX19_04865 and MPMX19_04866 are separated by 238 nucleotides
MPMX19_04862: MPMX19_04862 - hypothetical protein, at 300,205 to 301,752
_04862
MPMX19_04863: MPMX19_04863 - Transcriptional regulatory protein LnrK, at 301,771 to 302,505
_04863
MPMX19_04864: MPMX19_04864 - hypothetical protein, at 302,582 to 302,680
_04864
MPMX19_04865: MPMX19_04865 - Sensor histidine kinase RcsC, at 302,680 to 304,167
_04865
MPMX19_04866: MPMX19_04866 - hypothetical protein, at 304,406 to 306,673
_04866
Position (kb) 302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.750 kb on + strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 301.751 kb on - strand at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.279 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.366 kb on + strand, within MPMX19_04863 at 302.367 kb on - strand, within MPMX19_04863 at 302.532 kb on - strand at 302.539 kb on + strand at 302.540 kb on - strand at 302.540 kb on - strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.583 kb on + strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.584 kb on - strand at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.603 kb on + strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864 at 302.604 kb on - strand, within MPMX19_04864 at 302.984 kb on + strand, within MPMX19_04865 at 302.984 kb on + strand, within MPMX19_04865 at 302.984 kb on + strand, within MPMX19_04865 at 302.984 kb on + strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 302.985 kb on - strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.496 kb on + strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.497 kb on - strand, within MPMX19_04865 at 303.833 kb on + strand, within MPMX19_04865 at 303.833 kb on + strand, within MPMX19_04865 at 303.833 kb on + strand, within MPMX19_04865 at 303.833 kb on + strand, within MPMX19_04865 at 303.833 kb on + strand, within MPMX19_04865 at 303.834 kb on - strand, within MPMX19_04865 at 303.834 kb on - strand, within MPMX19_04865 at 303.834 kb on - strand, within MPMX19_04865 at 303.834 kb on - strand, within MPMX19_04865 at 303.834 kb on - strand, within MPMX19_04865 at 303.834 kb on - strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.016 kb on + strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.017 kb on - strand, within MPMX19_04865 at 304.077 kb on + strand at 304.077 kb on + strand at 304.077 kb on + strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.078 kb on - strand at 304.187 kb on + strand at 304.235 kb on + strand at 304.288 kb on - strand at 304.339 kb on - strand at 304.512 kb on + strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.513 kb on - strand at 304.689 kb on + strand, within MPMX19_04866 at 304.689 kb on + strand, within MPMX19_04866 at 304.690 kb on - strand, within MPMX19_04866 at 304.690 kb on - strand, within MPMX19_04866 at 304.690 kb on - strand, within MPMX19_04866 at 304.755 kb on + strand, within MPMX19_04866 at 304.755 kb on + strand, within MPMX19_04866 at 304.755 kb on + strand, within MPMX19_04866 at 304.755 kb on + strand, within MPMX19_04866 at 304.755 kb on + strand, within MPMX19_04866 at 304.755 kb on + strand, within MPMX19_04866 at 304.756 kb on - strand, within MPMX19_04866 at 304.756 kb on - strand, within MPMX19_04866 at 304.756 kb on - strand, within MPMX19_04866 at 304.756 kb on - strand, within MPMX19_04866 at 304.756 kb on - strand, within MPMX19_04866 at 304.794 kb on + strand, within MPMX19_04866 at 304.794 kb on + strand, within MPMX19_04866 at 304.794 kb on + strand, within MPMX19_04866 at 304.795 kb on - strand, within MPMX19_04866 at 304.795 kb on - strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.875 kb on + strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.876 kb on - strand, within MPMX19_04866 at 304.935 kb on + strand, within MPMX19_04866 at 304.937 kb on + strand, within MPMX19_04866 at 304.937 kb on + strand, within MPMX19_04866 at 304.938 kb on - strand, within MPMX19_04866 at 305.164 kb on - strand, within MPMX19_04866 at 305.164 kb on - strand, within MPMX19_04866 at 305.164 kb on - strand, within MPMX19_04866
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 301,750 + +0.2 301,750 + -0.4 301,750 + -0.2 301,750 + -0.0 301,751 - +1.2 301,751 - +0.4 301,751 - +0.6 301,751 - +1.3 301,751 - +0.5 302,279 + MPMX19_04863 0.69 -0.9 302,279 + MPMX19_04863 0.69 -0.3 302,279 + MPMX19_04863 0.69 -1.0 302,366 + MPMX19_04863 0.81 -1.4 302,366 + MPMX19_04863 0.81 +0.9 302,366 + MPMX19_04863 0.81 +0.1 302,367 - MPMX19_04863 0.81 -1.4 302,532 - -2.1 302,539 + +0.2 302,540 - -0.2 302,540 - +0.4 302,583 + -0.0 302,583 + -1.4 302,583 + -1.9 302,583 + -1.6 302,583 + -0.7 302,583 + +0.3 302,583 + -0.7 302,584 - -2.0 302,584 - +0.1 302,584 - -0.6 302,584 - +0.1 302,584 - -0.7 302,584 - -0.2 302,584 - +1.2 302,584 - -0.6 302,584 - +0.0 302,584 - +0.6 302,603 + MPMX19_04864 0.21 +0.7 302,603 + MPMX19_04864 0.21 -0.7 302,603 + MPMX19_04864 0.21 -0.1 302,603 + MPMX19_04864 0.21 -0.8 302,604 - MPMX19_04864 0.22 -2.6 302,604 - MPMX19_04864 0.22 -0.7 302,984 + MPMX19_04865 0.20 -0.5 302,984 + MPMX19_04865 0.20 -1.2 302,984 + MPMX19_04865 0.20 -1.5 302,984 + MPMX19_04865 0.20 -0.6 302,985 - MPMX19_04865 0.20 +0.7 302,985 - MPMX19_04865 0.20 -2.2 302,985 - MPMX19_04865 0.20 -1.0 302,985 - MPMX19_04865 0.20 -1.0 302,985 - MPMX19_04865 0.20 -0.7 303,496 + MPMX19_04865 0.55 -0.1 303,496 + MPMX19_04865 0.55 +0.6 303,496 + MPMX19_04865 0.55 -0.5 303,496 + MPMX19_04865 0.55 -0.4 303,497 - MPMX19_04865 0.55 -0.6 303,497 - MPMX19_04865 0.55 -0.7 303,497 - MPMX19_04865 0.55 +0.4 303,497 - MPMX19_04865 0.55 +0.1 303,497 - MPMX19_04865 0.55 -0.3 303,497 - MPMX19_04865 0.55 -0.7 303,497 - MPMX19_04865 0.55 -1.1 303,833 + MPMX19_04865 0.77 -0.4 303,833 + MPMX19_04865 0.77 -0.4 303,833 + MPMX19_04865 0.77 +2.6 303,833 + MPMX19_04865 0.77 -1.4 303,833 + MPMX19_04865 0.77 -1.0 303,834 - MPMX19_04865 0.78 -1.4 303,834 - MPMX19_04865 0.78 +0.3 303,834 - MPMX19_04865 0.78 -0.5 303,834 - MPMX19_04865 0.78 -0.3 303,834 - MPMX19_04865 0.78 -0.0 303,834 - MPMX19_04865 0.78 -0.7 304,016 + MPMX19_04865 0.90 -1.7 304,016 + MPMX19_04865 0.90 -1.0 304,016 + MPMX19_04865 0.90 +1.3 304,016 + MPMX19_04865 0.90 -1.4 304,016 + MPMX19_04865 0.90 -2.0 304,016 + MPMX19_04865 0.90 +0.9 304,016 + MPMX19_04865 0.90 -0.6 304,016 + MPMX19_04865 0.90 +1.3 304,016 + MPMX19_04865 0.90 -0.2 304,017 - MPMX19_04865 0.90 -1.2 304,017 - MPMX19_04865 0.90 +0.4 304,017 - MPMX19_04865 0.90 -0.0 304,017 - MPMX19_04865 0.90 -0.0 304,017 - MPMX19_04865 0.90 +1.2 304,017 - MPMX19_04865 0.90 +0.3 304,017 - MPMX19_04865 0.90 +0.3 304,017 - MPMX19_04865 0.90 -0.5 304,017 - MPMX19_04865 0.90 -1.0 304,017 - MPMX19_04865 0.90 -0.1 304,017 - MPMX19_04865 0.90 -0.4 304,077 + -0.5 304,077 + +0.3 304,077 + +0.0 304,078 - +0.1 304,078 - +0.3 304,078 - +0.6 304,078 - -1.0 304,078 - +1.3 304,078 - -0.3 304,078 - -0.5 304,078 - +0.2 304,187 + -0.7 304,235 + -1.4 304,288 - -2.7 304,339 - -1.2 304,512 + -1.2 304,513 - -2.2 304,513 - -0.6 304,513 - +0.8 304,513 - +0.2 304,513 - +0.7 304,513 - +0.2 304,513 - -0.7 304,513 - -1.4 304,689 + MPMX19_04866 0.12 +0.1 304,689 + MPMX19_04866 0.12 +0.2 304,690 - MPMX19_04866 0.13 -0.7 304,690 - MPMX19_04866 0.13 -2.1 304,690 - MPMX19_04866 0.13 -0.8 304,755 + MPMX19_04866 0.15 -0.5 304,755 + MPMX19_04866 0.15 +2.6 304,755 + MPMX19_04866 0.15 -0.0 304,755 + MPMX19_04866 0.15 +1.1 304,755 + MPMX19_04866 0.15 +0.6 304,755 + MPMX19_04866 0.15 -1.7 304,756 - MPMX19_04866 0.15 -1.4 304,756 - MPMX19_04866 0.15 +0.8 304,756 - MPMX19_04866 0.15 -0.3 304,756 - MPMX19_04866 0.15 -2.4 304,756 - MPMX19_04866 0.15 +0.4 304,794 + MPMX19_04866 0.17 +0.6 304,794 + MPMX19_04866 0.17 -1.2 304,794 + MPMX19_04866 0.17 -0.0 304,795 - MPMX19_04866 0.17 -0.4 304,795 - MPMX19_04866 0.17 -0.6 304,875 + MPMX19_04866 0.21 -0.5 304,875 + MPMX19_04866 0.21 -0.7 304,875 + MPMX19_04866 0.21 -0.2 304,875 + MPMX19_04866 0.21 -0.1 304,875 + MPMX19_04866 0.21 +0.3 304,875 + MPMX19_04866 0.21 -0.6 304,875 + MPMX19_04866 0.21 -0.6 304,875 + MPMX19_04866 0.21 -0.5 304,876 - MPMX19_04866 0.21 -1.4 304,876 - MPMX19_04866 0.21 -0.2 304,876 - MPMX19_04866 0.21 -2.0 304,876 - MPMX19_04866 0.21 +0.4 304,876 - MPMX19_04866 0.21 +0.8 304,876 - MPMX19_04866 0.21 +1.1 304,876 - MPMX19_04866 0.21 -2.2 304,935 + MPMX19_04866 0.23 +0.4 304,937 + MPMX19_04866 0.23 -0.3 304,937 + MPMX19_04866 0.23 +0.5 304,938 - MPMX19_04866 0.23 +0.6 305,164 - MPMX19_04866 0.33 -1.7 305,164 - MPMX19_04866 0.33 -1.7 305,164 - MPMX19_04866 0.33 +0.6
Or see this region's nucleotide sequence