Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04771 and MPMX19_04772 are separated by 59 nucleotides MPMX19_04772 and MPMX19_04773 are separated by 495 nucleotides MPMX19_04773 and MPMX19_04774 are separated by 361 nucleotides
MPMX19_04771: MPMX19_04771 - Sialic acid TRAP transporter permease protein SiaT, at 162,147 to 164,039
_04771
MPMX19_04772: MPMX19_04772 - L-threonate dehydrogenase, at 164,099 to 165,016
_04772
MPMX19_04773: MPMX19_04773 - tRNA-Ser, at 165,512 to 165,605
_04773
MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016
_04774
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.509 kb on + strand, within MPMX19_04771 at 163.536 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.563 kb on + strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.564 kb on - strand, within MPMX19_04771 at 163.839 kb on + strand, within MPMX19_04771 at 163.839 kb on + strand, within MPMX19_04771 at 163.840 kb on - strand, within MPMX19_04771 at 163.840 kb on - strand, within MPMX19_04771 at 163.902 kb on + strand at 163.902 kb on + strand at 163.902 kb on + strand at 163.902 kb on + strand at 163.905 kb on + strand at 163.905 kb on + strand at 163.906 kb on - strand at 163.906 kb on - strand at 163.906 kb on - strand at 163.906 kb on - strand at 163.965 kb on + strand at 163.965 kb on + strand at 163.966 kb on - strand at 163.966 kb on - strand at 164.951 kb on + strand at 164.951 kb on + strand at 164.951 kb on + strand at 164.951 kb on + strand at 164.952 kb on - strand at 165.175 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.391 kb on + strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.392 kb on - strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.778 kb on + strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.779 kb on - strand at 165.843 kb on - strand at 165.851 kb on + strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.852 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand at 165.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 163,509 + MPMX19_04771 0.72 +0.0 163,509 + MPMX19_04771 0.72 +0.4 163,509 + MPMX19_04771 0.72 -0.5 163,509 + MPMX19_04771 0.72 -1.1 163,509 + MPMX19_04771 0.72 +0.5 163,509 + MPMX19_04771 0.72 +0.0 163,536 + MPMX19_04771 0.73 -0.0 163,563 + MPMX19_04771 0.75 -0.9 163,563 + MPMX19_04771 0.75 +1.9 163,563 + MPMX19_04771 0.75 -0.1 163,563 + MPMX19_04771 0.75 +0.2 163,564 - MPMX19_04771 0.75 +0.6 163,564 - MPMX19_04771 0.75 -0.9 163,564 - MPMX19_04771 0.75 +0.5 163,564 - MPMX19_04771 0.75 -1.3 163,839 + MPMX19_04771 0.89 +0.4 163,839 + MPMX19_04771 0.89 -0.1 163,840 - MPMX19_04771 0.89 -0.3 163,840 - MPMX19_04771 0.89 +0.3 163,902 + -1.5 163,902 + +0.0 163,902 + -0.2 163,902 + -1.3 163,905 + +0.1 163,905 + +1.7 163,906 - -1.3 163,906 - +0.4 163,906 - -0.1 163,906 - -0.1 163,965 + +0.1 163,965 + -0.2 163,966 - -0.1 163,966 - -1.2 164,951 + +0.5 164,951 + -0.1 164,951 + -1.2 164,951 + -0.6 164,952 - +1.2 165,175 + -0.9 165,391 + -1.2 165,391 + -0.2 165,391 + -0.7 165,391 + +0.8 165,391 + +0.5 165,392 - +1.5 165,392 - +0.2 165,392 - -0.2 165,392 - -0.9 165,392 - -1.3 165,778 + -0.1 165,778 + -2.2 165,778 + +0.5 165,778 + -1.3 165,778 + -0.1 165,778 + +0.9 165,778 + +0.2 165,778 + -0.4 165,779 - +0.8 165,779 - +1.8 165,779 - -1.3 165,779 - +0.2 165,779 - -0.6 165,779 - +0.7 165,843 - -1.5 165,851 + -0.7 165,852 - -0.1 165,852 - -0.8 165,852 - +0.3 165,852 - -0.2 165,852 - -0.1 165,852 - +0.7 165,900 - -1.9 165,900 - -1.0 165,900 - -0.4 165,900 - -1.1
Or see this region's nucleotide sequence