Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04635 and MPMX19_04636 are separated by 10 nucleotides MPMX19_04636 and MPMX19_04637 overlap by 4 nucleotides
MPMX19_04635: MPMX19_04635 - D-inositol-3-phosphate glycosyltransferase, at 13,094 to 14,281
_04635
MPMX19_04636: MPMX19_04636 - D-inositol-3-phosphate glycosyltransferase, at 14,292 to 15,551
_04636
MPMX19_04637: MPMX19_04637 - hypothetical protein, at 15,548 to 17,251
_04637
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.562 kb on + strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.563 kb on - strand, within MPMX19_04635 at 13.625 kb on + strand, within MPMX19_04635 at 13.626 kb on - strand, within MPMX19_04635 at 13.626 kb on - strand, within MPMX19_04635 at 13.682 kb on + strand, within MPMX19_04635 at 13.962 kb on - strand, within MPMX19_04635 at 14.291 kb on + strand at 14.291 kb on + strand at 14.292 kb on - strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on + strand at 14.297 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.298 kb on - strand at 14.682 kb on + strand, within MPMX19_04636 at 14.682 kb on + strand, within MPMX19_04636 at 15.231 kb on + strand, within MPMX19_04636 at 15.232 kb on - strand, within MPMX19_04636 at 15.232 kb on - strand, within MPMX19_04636 at 15.255 kb on + strand, within MPMX19_04636 at 15.255 kb on + strand, within MPMX19_04636 at 15.256 kb on - strand, within MPMX19_04636 at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.432 kb on + strand at 15.433 kb on - strand at 15.442 kb on - strand at 15.442 kb on - strand at 15.459 kb on - strand at 15.459 kb on - strand at 15.495 kb on + strand at 15.495 kb on + strand at 15.495 kb on + strand at 15.495 kb on + strand at 15.496 kb on - strand at 15.496 kb on - strand at 15.496 kb on - strand at 15.496 kb on - strand at 15.633 kb on + strand at 15.633 kb on + strand at 15.634 kb on - strand at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.788 kb on + strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 15.789 kb on - strand, within MPMX19_04637 at 16.106 kb on - strand, within MPMX19_04637 at 16.115 kb on + strand, within MPMX19_04637 at 16.115 kb on + strand, within MPMX19_04637 at 16.115 kb on + strand, within MPMX19_04637 at 16.116 kb on - strand, within MPMX19_04637 at 16.290 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.329 kb on - strand, within MPMX19_04637
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 13,562 + MPMX19_04635 0.39 +1.3 13,562 + MPMX19_04635 0.39 -1.1 13,562 + MPMX19_04635 0.39 -0.0 13,562 + MPMX19_04635 0.39 +0.4 13,562 + MPMX19_04635 0.39 -0.4 13,562 + MPMX19_04635 0.39 -0.7 13,562 + MPMX19_04635 0.39 -0.2 13,563 - MPMX19_04635 0.39 -0.8 13,563 - MPMX19_04635 0.39 -0.2 13,563 - MPMX19_04635 0.39 -0.1 13,563 - MPMX19_04635 0.39 -0.8 13,625 + MPMX19_04635 0.45 +1.3 13,626 - MPMX19_04635 0.45 -0.1 13,626 - MPMX19_04635 0.45 +0.3 13,682 + MPMX19_04635 0.49 -1.4 13,962 - MPMX19_04635 0.73 -1.1 14,291 + +2.7 14,291 + -2.7 14,292 - -0.5 14,297 + -1.0 14,297 + +0.3 14,297 + +0.3 14,297 + -0.6 14,297 + -0.9 14,297 + +0.3 14,297 + +1.3 14,297 + -0.6 14,297 + -1.9 14,297 + +0.3 14,297 - -0.3 14,298 - +0.8 14,298 - -1.5 14,298 - +0.4 14,298 - +0.0 14,682 + MPMX19_04636 0.31 -0.1 14,682 + MPMX19_04636 0.31 -2.4 15,231 + MPMX19_04636 0.75 -0.3 15,232 - MPMX19_04636 0.75 +0.1 15,232 - MPMX19_04636 0.75 -0.8 15,255 + MPMX19_04636 0.76 -2.5 15,255 + MPMX19_04636 0.76 +0.5 15,256 - MPMX19_04636 0.77 -0.7 15,432 + +0.2 15,432 + +0.0 15,432 + +0.4 15,432 + -0.1 15,432 + -0.1 15,432 + +0.5 15,433 - -2.5 15,442 - +0.7 15,442 - +0.6 15,459 - -1.1 15,459 - +0.3 15,495 + -0.5 15,495 + -0.8 15,495 + -0.1 15,495 + +0.7 15,496 - -0.9 15,496 - -0.0 15,496 - -0.5 15,496 - -0.3 15,633 + -0.9 15,633 + -0.3 15,634 - -1.4 15,788 + MPMX19_04637 0.14 +0.2 15,788 + MPMX19_04637 0.14 +3.1 15,788 + MPMX19_04637 0.14 -0.1 15,788 + MPMX19_04637 0.14 -1.1 15,788 + MPMX19_04637 0.14 +0.1 15,788 + MPMX19_04637 0.14 +1.7 15,788 + MPMX19_04637 0.14 -0.3 15,788 + MPMX19_04637 0.14 +0.5 15,788 + MPMX19_04637 0.14 -1.1 15,788 + MPMX19_04637 0.14 -2.1 15,788 + MPMX19_04637 0.14 -1.5 15,789 - MPMX19_04637 0.14 +0.3 15,789 - MPMX19_04637 0.14 -0.1 15,789 - MPMX19_04637 0.14 -0.7 15,789 - MPMX19_04637 0.14 +0.0 15,789 - MPMX19_04637 0.14 -0.6 15,789 - MPMX19_04637 0.14 -0.3 16,106 - MPMX19_04637 0.33 -0.7 16,115 + MPMX19_04637 0.33 -0.7 16,115 + MPMX19_04637 0.33 -1.3 16,115 + MPMX19_04637 0.33 -0.6 16,116 - MPMX19_04637 0.33 -2.7 16,290 + MPMX19_04637 0.44 -0.2 16,328 + MPMX19_04637 0.46 -0.9 16,328 + MPMX19_04637 0.46 +0.4 16,328 + MPMX19_04637 0.46 -1.1 16,329 - MPMX19_04637 0.46 +0.8
Or see this region's nucleotide sequence