Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04593 and MPMX19_04594 are separated by 10 nucleotides MPMX19_04594 and MPMX19_04595 are separated by 178 nucleotides
MPMX19_04593: MPMX19_04593 - Adaptive-response sensory-kinase SasA, at 975,452 to 977,950
_04593
MPMX19_04594: MPMX19_04594 - Transcriptional regulatory protein QseB, at 977,961 to 978,635
_04594
MPMX19_04595: MPMX19_04595 - Inner membrane protein CreD, at 978,814 to 980,190
_04595
Position (kb) 977
978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 977.598 kb on + strand, within MPMX19_04593 at 977.598 kb on + strand, within MPMX19_04593 at 977.599 kb on - strand, within MPMX19_04593 at 977.599 kb on - strand, within MPMX19_04593 at 977.658 kb on + strand, within MPMX19_04593 at 977.697 kb on + strand, within MPMX19_04593 at 977.697 kb on + strand, within MPMX19_04593 at 977.697 kb on + strand, within MPMX19_04593 at 977.698 kb on - strand, within MPMX19_04593 at 977.698 kb on - strand, within MPMX19_04593 at 977.745 kb on + strand at 977.746 kb on - strand at 977.746 kb on - strand at 977.746 kb on - strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.829 kb on + strand at 977.830 kb on - strand at 977.830 kb on - strand at 977.830 kb on - strand at 977.830 kb on - strand at 977.856 kb on + strand at 977.856 kb on + strand at 977.856 kb on + strand at 977.856 kb on + strand at 977.857 kb on - strand at 977.888 kb on + strand at 977.888 kb on + strand at 977.889 kb on - strand at 977.889 kb on - strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.989 kb on + strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 977.990 kb on - strand at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.343 kb on + strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.344 kb on - strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.489 kb on + strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.490 kb on - strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.502 kb on + strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.503 kb on - strand, within MPMX19_04594 at 978.627 kb on + strand at 978.627 kb on + strand at 978.628 kb on - strand at 978.628 kb on - strand at 978.628 kb on - strand at 978.628 kb on - strand at 978.667 kb on + strand at 978.692 kb on + strand at 978.692 kb on + strand at 978.693 kb on - strand at 978.693 kb on - strand at 978.693 kb on - strand at 978.729 kb on + strand at 978.730 kb on - strand at 978.730 kb on - strand at 978.750 kb on + strand at 978.751 kb on - strand at 978.751 kb on - strand at 978.908 kb on + strand at 978.908 kb on + strand at 978.908 kb on + strand at 978.909 kb on - strand at 978.909 kb on - strand at 979.010 kb on + strand, within MPMX19_04595 at 979.010 kb on + strand, within MPMX19_04595 at 979.010 kb on + strand, within MPMX19_04595 at 979.010 kb on + strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.011 kb on - strand, within MPMX19_04595 at 979.064 kb on + strand, within MPMX19_04595 at 979.065 kb on - strand, within MPMX19_04595 at 979.065 kb on - strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.133 kb on + strand, within MPMX19_04595 at 979.134 kb on - strand, within MPMX19_04595 at 979.134 kb on - strand, within MPMX19_04595 at 979.181 kb on + strand, within MPMX19_04595 at 979.181 kb on + strand, within MPMX19_04595 at 979.181 kb on + strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.182 kb on - strand, within MPMX19_04595 at 979.217 kb on + strand, within MPMX19_04595 at 979.217 kb on + strand, within MPMX19_04595 at 979.217 kb on + strand, within MPMX19_04595 at 979.218 kb on - strand, within MPMX19_04595 at 979.244 kb on + strand, within MPMX19_04595 at 979.244 kb on + strand, within MPMX19_04595 at 979.244 kb on + strand, within MPMX19_04595 at 979.245 kb on - strand, within MPMX19_04595 at 979.245 kb on - strand, within MPMX19_04595 at 979.245 kb on - strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.289 kb on + strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.290 kb on - strand, within MPMX19_04595 at 979.346 kb on + strand, within MPMX19_04595 at 979.346 kb on + strand, within MPMX19_04595
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 977,598 + MPMX19_04593 0.86 -1.3 977,598 + MPMX19_04593 0.86 -2.4 977,599 - MPMX19_04593 0.86 +0.2 977,599 - MPMX19_04593 0.86 -0.1 977,658 + MPMX19_04593 0.88 +1.2 977,697 + MPMX19_04593 0.90 -0.7 977,697 + MPMX19_04593 0.90 -0.1 977,697 + MPMX19_04593 0.90 -0.9 977,698 - MPMX19_04593 0.90 -0.3 977,698 - MPMX19_04593 0.90 +0.1 977,745 + +0.5 977,746 - +0.8 977,746 - -1.3 977,746 - +0.4 977,829 + +0.1 977,829 + -0.9 977,829 + +0.7 977,829 + +0.6 977,829 + +0.3 977,829 + +1.0 977,829 + +0.7 977,829 + -2.3 977,829 + +0.3 977,829 + -0.0 977,829 + -0.1 977,830 - -0.7 977,830 - +0.2 977,830 - +0.7 977,830 - +0.7 977,856 + -0.8 977,856 + -0.2 977,856 + +0.1 977,856 + -0.4 977,857 - -0.3 977,888 + +1.4 977,888 + +0.1 977,889 - -0.6 977,889 - +0.8 977,989 + -1.3 977,989 + -1.7 977,989 + +0.5 977,989 + -0.6 977,989 + -0.2 977,990 - +0.7 977,990 - -0.4 977,990 - -0.8 977,990 - -0.2 977,990 - +1.3 977,990 - -0.8 978,343 + MPMX19_04594 0.57 -0.0 978,343 + MPMX19_04594 0.57 -2.2 978,343 + MPMX19_04594 0.57 -0.1 978,343 + MPMX19_04594 0.57 +0.4 978,343 + MPMX19_04594 0.57 +0.2 978,343 + MPMX19_04594 0.57 -0.8 978,343 + MPMX19_04594 0.57 -0.1 978,344 - MPMX19_04594 0.57 +0.1 978,344 - MPMX19_04594 0.57 +0.3 978,344 - MPMX19_04594 0.57 +0.4 978,344 - MPMX19_04594 0.57 -0.4 978,489 + MPMX19_04594 0.78 +1.0 978,489 + MPMX19_04594 0.78 -0.2 978,489 + MPMX19_04594 0.78 -0.5 978,489 + MPMX19_04594 0.78 -0.2 978,489 + MPMX19_04594 0.78 -0.5 978,490 - MPMX19_04594 0.78 -0.3 978,490 - MPMX19_04594 0.78 +1.2 978,490 - MPMX19_04594 0.78 +1.1 978,490 - MPMX19_04594 0.78 -0.5 978,490 - MPMX19_04594 0.78 -1.0 978,490 - MPMX19_04594 0.78 -1.7 978,502 + MPMX19_04594 0.80 +2.1 978,502 + MPMX19_04594 0.80 -0.5 978,502 + MPMX19_04594 0.80 -1.1 978,502 + MPMX19_04594 0.80 -0.1 978,502 + MPMX19_04594 0.80 -2.3 978,502 + MPMX19_04594 0.80 -1.7 978,502 + MPMX19_04594 0.80 +0.2 978,503 - MPMX19_04594 0.80 +0.8 978,503 - MPMX19_04594 0.80 +0.1 978,503 - MPMX19_04594 0.80 -1.0 978,503 - MPMX19_04594 0.80 -0.8 978,503 - MPMX19_04594 0.80 +0.3 978,503 - MPMX19_04594 0.80 -2.5 978,503 - MPMX19_04594 0.80 -0.9 978,503 - MPMX19_04594 0.80 +0.3 978,503 - MPMX19_04594 0.80 -0.3 978,503 - MPMX19_04594 0.80 +0.4 978,503 - MPMX19_04594 0.80 -0.5 978,627 + -0.6 978,627 + -0.4 978,628 - -0.8 978,628 - -0.2 978,628 - +0.1 978,628 - -0.5 978,667 + -0.2 978,692 + +0.1 978,692 + -1.7 978,693 - -0.3 978,693 - +0.1 978,693 - -1.8 978,729 + -0.9 978,730 - -0.6 978,730 - -0.2 978,750 + -0.8 978,751 - -0.2 978,751 - -0.0 978,908 + -1.3 978,908 + +0.4 978,908 + +0.2 978,909 - -1.0 978,909 - +1.0 979,010 + MPMX19_04595 0.14 -0.3 979,010 + MPMX19_04595 0.14 -0.2 979,010 + MPMX19_04595 0.14 +0.2 979,010 + MPMX19_04595 0.14 -0.5 979,011 - MPMX19_04595 0.14 -0.2 979,011 - MPMX19_04595 0.14 -2.3 979,011 - MPMX19_04595 0.14 +0.9 979,011 - MPMX19_04595 0.14 -0.4 979,064 + MPMX19_04595 0.18 -0.0 979,065 - MPMX19_04595 0.18 -1.7 979,065 - MPMX19_04595 0.18 +0.8 979,133 + MPMX19_04595 0.23 -0.5 979,133 + MPMX19_04595 0.23 +0.9 979,133 + MPMX19_04595 0.23 -0.6 979,133 + MPMX19_04595 0.23 +0.2 979,133 + MPMX19_04595 0.23 -1.0 979,134 - MPMX19_04595 0.23 -0.0 979,134 - MPMX19_04595 0.23 -2.3 979,181 + MPMX19_04595 0.27 -0.3 979,181 + MPMX19_04595 0.27 +0.7 979,181 + MPMX19_04595 0.27 -0.2 979,182 - MPMX19_04595 0.27 -1.7 979,182 - MPMX19_04595 0.27 -0.6 979,182 - MPMX19_04595 0.27 -1.0 979,182 - MPMX19_04595 0.27 +2.2 979,217 + MPMX19_04595 0.29 +0.2 979,217 + MPMX19_04595 0.29 -1.2 979,217 + MPMX19_04595 0.29 +0.9 979,218 - MPMX19_04595 0.29 -0.4 979,244 + MPMX19_04595 0.31 +1.2 979,244 + MPMX19_04595 0.31 +0.1 979,244 + MPMX19_04595 0.31 -0.9 979,245 - MPMX19_04595 0.31 +0.2 979,245 - MPMX19_04595 0.31 -0.3 979,245 - MPMX19_04595 0.31 -0.5 979,289 + MPMX19_04595 0.34 +0.1 979,289 + MPMX19_04595 0.34 +0.1 979,289 + MPMX19_04595 0.34 -0.8 979,289 + MPMX19_04595 0.34 +0.1 979,289 + MPMX19_04595 0.34 -0.9 979,289 + MPMX19_04595 0.34 +1.1 979,290 - MPMX19_04595 0.35 +1.3 979,290 - MPMX19_04595 0.35 -1.1 979,290 - MPMX19_04595 0.35 -0.5 979,290 - MPMX19_04595 0.35 -0.9 979,346 + MPMX19_04595 0.39 +1.1 979,346 + MPMX19_04595 0.39 -0.1
Or see this region's nucleotide sequence