Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04209 and MPMX19_04210 are separated by 75 nucleotides MPMX19_04210 and MPMX19_04211 are separated by 233 nucleotides MPMX19_04211 and MPMX19_04212 overlap by 4 nucleotides
MPMX19_04209: MPMX19_04209 - Lipopolysaccharide assembly protein B, at 542,859 to 548,912
_04209
MPMX19_04210: MPMX19_04210 - hypothetical protein, at 548,988 to 549,167
_04210
MPMX19_04211: MPMX19_04211 - hypothetical protein, at 549,401 to 550,084
_04211
MPMX19_04212: MPMX19_04212 - Photosystem I assembly protein Ycf3, at 550,081 to 553,632
_04212
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.038 kb on + strand, within MPMX19_04209 at 548.039 kb on - strand, within MPMX19_04209 at 548.177 kb on - strand, within MPMX19_04209 at 548.177 kb on - strand, within MPMX19_04209 at 548.264 kb on + strand, within MPMX19_04209 at 548.264 kb on + strand, within MPMX19_04209 at 548.264 kb on + strand, within MPMX19_04209 at 548.321 kb on + strand at 548.321 kb on + strand at 548.321 kb on + strand at 548.321 kb on + strand at 548.322 kb on - strand at 548.322 kb on - strand at 548.466 kb on + strand at 548.466 kb on + strand at 548.466 kb on + strand at 548.466 kb on + strand at 548.467 kb on - strand at 548.532 kb on + strand at 548.532 kb on + strand at 548.532 kb on + strand at 548.532 kb on + strand at 548.533 kb on - strand at 548.533 kb on - strand at 548.937 kb on + strand at 548.944 kb on + strand at 548.944 kb on + strand at 548.944 kb on + strand at 548.945 kb on - strand at 548.945 kb on - strand at 549.063 kb on + strand, within MPMX19_04210 at 549.063 kb on + strand, within MPMX19_04210 at 549.063 kb on + strand, within MPMX19_04210 at 549.063 kb on + strand, within MPMX19_04210 at 549.064 kb on - strand, within MPMX19_04210 at 549.064 kb on - strand, within MPMX19_04210 at 549.259 kb on + strand at 549.259 kb on + strand at 549.260 kb on - strand at 549.272 kb on + strand at 549.273 kb on - strand at 549.273 kb on - strand at 549.316 kb on + strand at 549.316 kb on + strand at 549.317 kb on - strand at 549.317 kb on - strand at 549.317 kb on - strand at 549.317 kb on - strand at 549.402 kb on + strand at 549.402 kb on + strand at 549.467 kb on - strand at 549.498 kb on + strand, within MPMX19_04211 at 549.499 kb on - strand, within MPMX19_04211 at 549.499 kb on - strand, within MPMX19_04211 at 549.528 kb on - strand, within MPMX19_04211 at 549.528 kb on - strand, within MPMX19_04211 at 549.528 kb on - strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.699 kb on + strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 549.700 kb on - strand, within MPMX19_04211 at 550.005 kb on + strand, within MPMX19_04211 at 550.006 kb on - strand, within MPMX19_04211 at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.069 kb on + strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand at 550.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 548,038 + MPMX19_04209 0.86 +0.4 548,039 - MPMX19_04209 0.86 -1.0 548,177 - MPMX19_04209 0.88 -1.0 548,177 - MPMX19_04209 0.88 -1.2 548,264 + MPMX19_04209 0.89 +0.6 548,264 + MPMX19_04209 0.89 +2.0 548,264 + MPMX19_04209 0.89 -0.2 548,321 + +1.4 548,321 + -0.9 548,321 + -0.1 548,321 + +0.4 548,322 - -1.2 548,322 - -1.0 548,466 + +0.0 548,466 + +0.1 548,466 + -0.8 548,466 + +0.1 548,467 - -0.2 548,532 + -0.8 548,532 + +1.0 548,532 + -2.0 548,532 + -0.2 548,533 - +0.0 548,533 - +0.4 548,937 + -0.7 548,944 + -0.0 548,944 + -0.1 548,944 + +0.3 548,945 - -3.0 548,945 - -0.5 549,063 + MPMX19_04210 0.42 -0.1 549,063 + MPMX19_04210 0.42 -0.3 549,063 + MPMX19_04210 0.42 -0.3 549,063 + MPMX19_04210 0.42 -1.7 549,064 - MPMX19_04210 0.42 -1.6 549,064 - MPMX19_04210 0.42 -1.4 549,259 + +1.0 549,259 + -1.0 549,260 - -0.2 549,272 + -2.2 549,273 - -2.0 549,273 - -1.7 549,316 + -0.2 549,316 + -2.5 549,317 - -1.2 549,317 - -0.1 549,317 - +0.0 549,317 - -0.9 549,402 + +0.2 549,402 + -0.5 549,467 - -0.2 549,498 + MPMX19_04211 0.14 -0.4 549,499 - MPMX19_04211 0.14 -0.7 549,499 - MPMX19_04211 0.14 -0.9 549,528 - MPMX19_04211 0.19 -2.0 549,528 - MPMX19_04211 0.19 -0.2 549,528 - MPMX19_04211 0.19 -1.7 549,699 + MPMX19_04211 0.44 -0.5 549,699 + MPMX19_04211 0.44 +1.4 549,699 + MPMX19_04211 0.44 -1.2 549,699 + MPMX19_04211 0.44 -0.5 549,699 + MPMX19_04211 0.44 +0.5 549,699 + MPMX19_04211 0.44 +1.0 549,699 + MPMX19_04211 0.44 +0.6 549,699 + MPMX19_04211 0.44 -0.1 549,699 + MPMX19_04211 0.44 +0.5 549,700 - MPMX19_04211 0.44 -0.1 549,700 - MPMX19_04211 0.44 +0.1 549,700 - MPMX19_04211 0.44 +0.2 549,700 - MPMX19_04211 0.44 -0.3 549,700 - MPMX19_04211 0.44 -0.2 550,005 + MPMX19_04211 0.88 +0.4 550,006 - MPMX19_04211 0.88 +0.7 550,069 + -1.0 550,069 + -0.8 550,069 + +0.1 550,069 + -0.2 550,069 + +0.6 550,069 + -1.0 550,069 + -1.8 550,070 - -0.7 550,070 - +0.9 550,070 - -1.0 550,070 - -0.8 550,070 - -1.5 550,070 - +0.9 550,070 - -1.0
Or see this region's nucleotide sequence