Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03127 and MPMX19_03128 are separated by 59 nucleotides MPMX19_03128 and MPMX19_03129 are separated by 357 nucleotides
MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404
_03127
MPMX19_03128: MPMX19_03128 - hypothetical protein, at 415,464 to 416,042
_03128
MPMX19_03129: MPMX19_03129 - Citrate/malate transporter, at 416,400 to 417,761
_03129
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 414.979 kb on + strand, within MPMX19_03127 at 415.234 kb on + strand, within MPMX19_03127 at 415.234 kb on + strand, within MPMX19_03127 at 415.234 kb on + strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.235 kb on - strand, within MPMX19_03127 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.533 kb on + strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 415.534 kb on - strand, within MPMX19_03128 at 416.013 kb on - strand at 416.122 kb on + strand at 416.123 kb on - strand at 416.149 kb on + strand at 416.150 kb on - strand at 416.194 kb on + strand at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.724 kb on + strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.725 kb on - strand, within MPMX19_03129 at 416.727 kb on + strand, within MPMX19_03129 at 416.727 kb on + strand, within MPMX19_03129 at 416.727 kb on + strand, within MPMX19_03129 at 416.728 kb on - strand, within MPMX19_03129 at 416.728 kb on - strand, within MPMX19_03129 at 416.728 kb on - strand, within MPMX19_03129 at 416.793 kb on + strand, within MPMX19_03129 at 416.793 kb on + strand, within MPMX19_03129 at 416.793 kb on + strand, within MPMX19_03129 at 417.030 kb on + strand, within MPMX19_03129 at 417.030 kb on + strand, within MPMX19_03129
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 414,979 + MPMX19_03127 0.56 +0.9 415,234 + MPMX19_03127 0.82 -2.5 415,234 + MPMX19_03127 0.82 +0.6 415,234 + MPMX19_03127 0.82 -2.5 415,235 - MPMX19_03127 0.83 -0.4 415,235 - MPMX19_03127 0.83 -0.4 415,235 - MPMX19_03127 0.83 -0.8 415,235 - MPMX19_03127 0.83 -0.9 415,533 + MPMX19_03128 0.12 +0.4 415,533 + MPMX19_03128 0.12 -1.7 415,533 + MPMX19_03128 0.12 -1.4 415,533 + MPMX19_03128 0.12 +0.1 415,533 + MPMX19_03128 0.12 -2.9 415,533 + MPMX19_03128 0.12 -0.8 415,533 + MPMX19_03128 0.12 -2.4 415,533 + MPMX19_03128 0.12 -0.7 415,533 + MPMX19_03128 0.12 -2.4 415,533 + MPMX19_03128 0.12 +1.3 415,534 - MPMX19_03128 0.12 +0.8 415,534 - MPMX19_03128 0.12 -0.3 415,534 - MPMX19_03128 0.12 -1.1 416,013 - -1.7 416,122 + -0.6 416,123 - -0.2 416,149 + -0.9 416,150 - +1.5 416,194 + -2.1 416,724 + MPMX19_03129 0.24 -0.8 416,724 + MPMX19_03129 0.24 -0.2 416,724 + MPMX19_03129 0.24 -2.3 416,724 + MPMX19_03129 0.24 +1.0 416,724 + MPMX19_03129 0.24 +0.7 416,724 + MPMX19_03129 0.24 +0.7 416,724 + MPMX19_03129 0.24 +0.2 416,724 + MPMX19_03129 0.24 +0.1 416,725 - MPMX19_03129 0.24 -1.1 416,725 - MPMX19_03129 0.24 +0.5 416,725 - MPMX19_03129 0.24 -0.2 416,725 - MPMX19_03129 0.24 +0.2 416,725 - MPMX19_03129 0.24 -1.5 416,725 - MPMX19_03129 0.24 -1.9 416,725 - MPMX19_03129 0.24 -0.5 416,725 - MPMX19_03129 0.24 -0.4 416,725 - MPMX19_03129 0.24 +0.0 416,725 - MPMX19_03129 0.24 -0.1 416,725 - MPMX19_03129 0.24 +2.7 416,727 + MPMX19_03129 0.24 -0.4 416,727 + MPMX19_03129 0.24 +0.7 416,727 + MPMX19_03129 0.24 +0.8 416,728 - MPMX19_03129 0.24 -0.7 416,728 - MPMX19_03129 0.24 -0.6 416,728 - MPMX19_03129 0.24 -0.7 416,793 + MPMX19_03129 0.29 -1.7 416,793 + MPMX19_03129 0.29 -1.5 416,793 + MPMX19_03129 0.29 +0.7 417,030 + MPMX19_03129 0.46 +0.5 417,030 + MPMX19_03129 0.46 +0.7
Or see this region's nucleotide sequence