Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02980

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02979 and MPMX19_02980 overlap by 4 nucleotidesMPMX19_02980 and MPMX19_02981 overlap by 20 nucleotides MPMX19_02979: MPMX19_02979 - Hydrogen cyanide synthase subunit HcnB, at 240,940 to 242,397 _02979 MPMX19_02980: MPMX19_02980 - Hydrogen cyanide synthase subunit HcnA, at 242,394 to 242,696 _02980 MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810 _02981 Position (kb) 242 243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 241.631 kb on + strand, within MPMX19_02979at 241.632 kb on - strand, within MPMX19_02979at 241.632 kb on - strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.857 kb on - strand, within MPMX19_02979at 241.857 kb on - strand, within MPMX19_02979at 242.259 kb on - strandat 242.259 kb on - strandat 242.375 kb on - strandat 242.506 kb on + strand, within MPMX19_02980at 242.507 kb on - strand, within MPMX19_02980at 242.507 kb on - strand, within MPMX19_02980at 242.528 kb on - strand, within MPMX19_02980at 242.846 kb on + strand, within MPMX19_02981at 242.846 kb on + strand, within MPMX19_02981at 242.847 kb on - strand, within MPMX19_02981at 243.044 kb on + strand, within MPMX19_02981at 243.044 kb on + strand, within MPMX19_02981at 243.045 kb on - strand, within MPMX19_02981at 243.045 kb on - strand, within MPMX19_02981at 243.045 kb on - strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.420 kb on - strand, within MPMX19_02981at 243.611 kb on + strand, within MPMX19_02981at 243.612 kb on - strand, within MPMX19_02981

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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241,631 + MPMX19_02979 0.47 -2.1
241,632 - MPMX19_02979 0.47 -2.0
241,632 - MPMX19_02979 0.47 +0.1
241,856 + MPMX19_02979 0.63 -0.1
241,856 + MPMX19_02979 0.63 -1.5
241,856 + MPMX19_02979 0.63 -1.5
241,856 + MPMX19_02979 0.63 -0.6
241,856 + MPMX19_02979 0.63 -0.2
241,857 - MPMX19_02979 0.63 -0.5
241,857 - MPMX19_02979 0.63 -0.1
242,259 - +0.4
242,259 - -1.2
242,375 - +0.8
242,506 + MPMX19_02980 0.37 -2.3
242,507 - MPMX19_02980 0.37 -0.3
242,507 - MPMX19_02980 0.37 -2.1
242,528 - MPMX19_02980 0.44 -2.6
242,846 + MPMX19_02981 0.15 -1.7
242,846 + MPMX19_02981 0.15 +1.1
242,847 - MPMX19_02981 0.15 -1.8
243,044 + MPMX19_02981 0.32 -2.1
243,044 + MPMX19_02981 0.32 -0.5
243,045 - MPMX19_02981 0.32 -1.5
243,045 - MPMX19_02981 0.32 -2.2
243,045 - MPMX19_02981 0.32 -0.8
243,347 + MPMX19_02981 0.59 -2.2
243,347 + MPMX19_02981 0.59 -2.1
243,347 + MPMX19_02981 0.59 -1.8
243,347 + MPMX19_02981 0.59 -2.6
243,347 + MPMX19_02981 0.59 -3.8
243,347 + MPMX19_02981 0.59 -2.4
243,347 + MPMX19_02981 0.59 -1.8
243,347 + MPMX19_02981 0.59 -0.7
243,348 - MPMX19_02981 0.59 -3.7
243,348 - MPMX19_02981 0.59 -0.3
243,348 - MPMX19_02981 0.59 -0.4
243,348 - MPMX19_02981 0.59 -1.1
243,348 - MPMX19_02981 0.59 -0.8
243,348 - MPMX19_02981 0.59 +1.2
243,348 - MPMX19_02981 0.59 -1.2
243,420 - MPMX19_02981 0.66 +0.8
243,611 + MPMX19_02981 0.82 -0.8
243,612 - MPMX19_02981 0.82 -2.9

Or see this region's nucleotide sequence