Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02966 and MPMX19_02967 are separated by 5 nucleotides MPMX19_02967 and MPMX19_02968 are separated by 85 nucleotides
MPMX19_02966: MPMX19_02966 - Carboxylesterase NlhH, at 225,323 to 226,096
_02966
MPMX19_02967: MPMX19_02967 - Efflux pump periplasmic linker BepF, at 226,102 to 227,265
_02967
MPMX19_02968: MPMX19_02968 - multidrug efflux RND transporter permease subunit OqxB28, at 227,351 to 230,539
_02968
Position (kb) 226
227
228 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.170 kb on - strand at 225.198 kb on - strand at 225.252 kb on + strand at 225.252 kb on + strand at 225.253 kb on - strand at 225.253 kb on - strand at 225.253 kb on - strand at 225.258 kb on - strand at 225.276 kb on + strand at 225.276 kb on + strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.277 kb on - strand at 225.419 kb on + strand, within MPMX19_02966 at 225.419 kb on + strand, within MPMX19_02966 at 225.419 kb on + strand, within MPMX19_02966 at 225.419 kb on + strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.420 kb on - strand, within MPMX19_02966 at 225.521 kb on + strand, within MPMX19_02966 at 225.794 kb on + strand, within MPMX19_02966 at 225.803 kb on + strand, within MPMX19_02966 at 225.803 kb on + strand, within MPMX19_02966 at 225.804 kb on - strand, within MPMX19_02966 at 225.804 kb on - strand, within MPMX19_02966 at 225.836 kb on + strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.837 kb on - strand, within MPMX19_02966 at 225.932 kb on + strand, within MPMX19_02966 at 225.932 kb on + strand, within MPMX19_02966 at 225.932 kb on + strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 225.933 kb on - strand, within MPMX19_02966 at 226.095 kb on - strand at 226.095 kb on - strand at 226.095 kb on - strand at 226.276 kb on + strand, within MPMX19_02967 at 226.276 kb on + strand, within MPMX19_02967 at 226.276 kb on + strand, within MPMX19_02967 at 226.277 kb on - strand, within MPMX19_02967 at 226.277 kb on - strand, within MPMX19_02967 at 226.277 kb on - strand, within MPMX19_02967 at 226.411 kb on + strand, within MPMX19_02967 at 226.412 kb on - strand, within MPMX19_02967 at 226.750 kb on + strand, within MPMX19_02967 at 226.750 kb on + strand, within MPMX19_02967 at 226.750 kb on + strand, within MPMX19_02967 at 226.750 kb on + strand, within MPMX19_02967 at 226.750 kb on + strand, within MPMX19_02967 at 226.750 kb on + strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.751 kb on - strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.780 kb on + strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.781 kb on - strand, within MPMX19_02967 at 226.855 kb on + strand, within MPMX19_02967 at 226.855 kb on + strand, within MPMX19_02967 at 226.856 kb on - strand, within MPMX19_02967 at 226.856 kb on - strand, within MPMX19_02967 at 226.856 kb on - strand, within MPMX19_02967 at 226.856 kb on - strand, within MPMX19_02967 at 226.970 kb on - strand, within MPMX19_02967 at 226.970 kb on - strand, within MPMX19_02967 at 227.002 kb on + strand, within MPMX19_02967 at 227.003 kb on - strand, within MPMX19_02967 at 227.092 kb on + strand, within MPMX19_02967 at 227.093 kb on - strand, within MPMX19_02967 at 227.263 kb on + strand at 227.264 kb on - strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.585 kb on + strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.586 kb on - strand at 227.801 kb on + strand, within MPMX19_02968 at 227.801 kb on + strand, within MPMX19_02968 at 227.801 kb on + strand, within MPMX19_02968 at 227.802 kb on - strand, within MPMX19_02968 at 227.802 kb on - strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.813 kb on + strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.814 kb on - strand, within MPMX19_02968 at 227.825 kb on + strand, within MPMX19_02968 at 227.825 kb on + strand, within MPMX19_02968 at 227.826 kb on - strand, within MPMX19_02968 at 227.826 kb on - strand, within MPMX19_02968 at 227.826 kb on - strand, within MPMX19_02968 at 227.826 kb on - strand, within MPMX19_02968 at 227.826 kb on - strand, within MPMX19_02968 at 227.903 kb on + strand, within MPMX19_02968 at 227.903 kb on + strand, within MPMX19_02968 at 227.903 kb on + strand, within MPMX19_02968 at 227.904 kb on - strand, within MPMX19_02968 at 228.055 kb on - strand, within MPMX19_02968 at 228.055 kb on - strand, within MPMX19_02968 at 228.055 kb on - strand, within MPMX19_02968 at 228.182 kb on + strand, within MPMX19_02968 at 228.182 kb on + strand, within MPMX19_02968 at 228.182 kb on + strand, within MPMX19_02968 at 228.182 kb on + strand, within MPMX19_02968 at 228.183 kb on - strand, within MPMX19_02968 at 228.183 kb on - strand, within MPMX19_02968 at 228.183 kb on - strand, within MPMX19_02968
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 225,110 + +0.6 225,110 + -0.8 225,110 + +0.7 225,110 + -0.6 225,110 + -0.9 225,110 + +0.3 225,110 + +0.3 225,110 + +0.7 225,110 + +1.5 225,110 + -1.6 225,110 + -0.3 225,110 + +0.2 225,110 + -0.3 225,110 + -1.1 225,111 - -1.8 225,111 - -0.3 225,111 - -0.5 225,111 - +0.5 225,111 - -1.3 225,111 - +0.8 225,111 - -1.0 225,111 - -0.1 225,112 + -0.6 225,112 + -2.1 225,112 + -1.1 225,112 + +0.0 225,112 + -0.2 225,112 + +0.3 225,112 + -0.1 225,112 + +0.1 225,112 + +1.2 225,112 + -2.1 225,112 + -0.8 225,112 + +0.1 225,112 + -0.3 225,112 + -0.1 225,112 + -0.1 225,112 + +1.1 225,112 + -1.5 225,113 - +0.7 225,113 - -0.1 225,113 - -0.9 225,113 - -0.9 225,113 - -2.6 225,113 - -1.3 225,113 - -0.4 225,113 - -0.3 225,113 - -0.8 225,113 - +0.1 225,170 - +0.5 225,198 - -0.1 225,252 + -0.8 225,252 + -1.3 225,253 - -1.7 225,253 - -0.9 225,253 - -0.2 225,258 - -1.1 225,276 + -0.1 225,276 + -0.1 225,277 - -1.4 225,277 - -2.6 225,277 - -2.3 225,277 - -0.4 225,277 - -1.2 225,277 - -0.1 225,277 - +0.7 225,419 + MPMX19_02966 0.12 -1.4 225,419 + MPMX19_02966 0.12 -2.3 225,419 + MPMX19_02966 0.12 +0.4 225,419 + MPMX19_02966 0.12 +0.1 225,420 - MPMX19_02966 0.13 -1.9 225,420 - MPMX19_02966 0.13 -1.1 225,420 - MPMX19_02966 0.13 +0.1 225,420 - MPMX19_02966 0.13 -1.2 225,420 - MPMX19_02966 0.13 -0.5 225,521 + MPMX19_02966 0.26 -0.2 225,794 + MPMX19_02966 0.61 -0.1 225,803 + MPMX19_02966 0.62 -0.2 225,803 + MPMX19_02966 0.62 +0.3 225,804 - MPMX19_02966 0.62 -1.8 225,804 - MPMX19_02966 0.62 -1.9 225,836 + MPMX19_02966 0.66 +1.3 225,837 - MPMX19_02966 0.66 +0.7 225,837 - MPMX19_02966 0.66 -0.0 225,837 - MPMX19_02966 0.66 -1.1 225,837 - MPMX19_02966 0.66 -0.5 225,837 - MPMX19_02966 0.66 -1.9 225,932 + MPMX19_02966 0.79 -0.2 225,932 + MPMX19_02966 0.79 -0.1 225,932 + MPMX19_02966 0.79 -2.2 225,933 - MPMX19_02966 0.79 -0.4 225,933 - MPMX19_02966 0.79 +0.4 225,933 - MPMX19_02966 0.79 -0.5 225,933 - MPMX19_02966 0.79 -0.1 225,933 - MPMX19_02966 0.79 -1.4 226,095 - -1.2 226,095 - -1.4 226,095 - -0.6 226,276 + MPMX19_02967 0.15 -0.1 226,276 + MPMX19_02967 0.15 -0.5 226,276 + MPMX19_02967 0.15 -2.3 226,277 - MPMX19_02967 0.15 +0.8 226,277 - MPMX19_02967 0.15 +0.8 226,277 - MPMX19_02967 0.15 -0.6 226,411 + MPMX19_02967 0.27 -1.5 226,412 - MPMX19_02967 0.27 -1.9 226,750 + MPMX19_02967 0.56 -0.8 226,750 + MPMX19_02967 0.56 -2.9 226,750 + MPMX19_02967 0.56 -0.2 226,750 + MPMX19_02967 0.56 -1.8 226,750 + MPMX19_02967 0.56 -0.3 226,750 + MPMX19_02967 0.56 -1.9 226,751 - MPMX19_02967 0.56 -0.8 226,751 - MPMX19_02967 0.56 -0.8 226,751 - MPMX19_02967 0.56 -0.3 226,751 - MPMX19_02967 0.56 -1.0 226,751 - MPMX19_02967 0.56 -1.4 226,751 - MPMX19_02967 0.56 -0.1 226,751 - MPMX19_02967 0.56 -1.6 226,751 - MPMX19_02967 0.56 -0.3 226,751 - MPMX19_02967 0.56 -0.5 226,751 - MPMX19_02967 0.56 -0.6 226,780 + MPMX19_02967 0.58 -1.2 226,780 + MPMX19_02967 0.58 -1.9 226,780 + MPMX19_02967 0.58 +0.1 226,780 + MPMX19_02967 0.58 +0.9 226,780 + MPMX19_02967 0.58 -0.2 226,780 + MPMX19_02967 0.58 -1.8 226,780 + MPMX19_02967 0.58 -0.3 226,780 + MPMX19_02967 0.58 -0.5 226,781 - MPMX19_02967 0.58 -1.4 226,781 - MPMX19_02967 0.58 +0.2 226,781 - MPMX19_02967 0.58 -0.1 226,781 - MPMX19_02967 0.58 -1.6 226,781 - MPMX19_02967 0.58 -1.1 226,781 - MPMX19_02967 0.58 -1.1 226,781 - MPMX19_02967 0.58 -1.6 226,855 + MPMX19_02967 0.65 -2.1 226,855 + MPMX19_02967 0.65 +0.0 226,856 - MPMX19_02967 0.65 -1.5 226,856 - MPMX19_02967 0.65 +0.4 226,856 - MPMX19_02967 0.65 -2.3 226,856 - MPMX19_02967 0.65 -0.3 226,970 - MPMX19_02967 0.75 -1.4 226,970 - MPMX19_02967 0.75 -0.6 227,002 + MPMX19_02967 0.77 -0.1 227,003 - MPMX19_02967 0.77 -0.7 227,092 + MPMX19_02967 0.85 -2.0 227,093 - MPMX19_02967 0.85 -0.1 227,263 + -1.3 227,264 - +0.4 227,585 + -0.2 227,585 + -1.5 227,585 + +1.7 227,585 + -0.5 227,585 + +0.0 227,585 + -0.6 227,585 + -0.2 227,585 + -0.5 227,585 + -0.2 227,585 + -1.5 227,585 + -0.1 227,585 + -0.4 227,585 + +0.0 227,585 + -0.9 227,585 + -1.2 227,585 + -0.4 227,585 + +0.7 227,585 + +0.1 227,585 + +0.3 227,585 + -0.9 227,586 - -0.6 227,586 - +0.0 227,586 - -0.1 227,586 - +0.5 227,586 - +0.2 227,586 - -1.0 227,586 - -0.1 227,586 - -0.5 227,586 - -1.4 227,586 - +1.5 227,586 - +1.2 227,586 - -0.1 227,586 - -1.1 227,801 + MPMX19_02968 0.14 -0.1 227,801 + MPMX19_02968 0.14 -0.8 227,801 + MPMX19_02968 0.14 -1.3 227,802 - MPMX19_02968 0.14 -0.4 227,802 - MPMX19_02968 0.14 +0.2 227,813 + MPMX19_02968 0.14 -0.3 227,813 + MPMX19_02968 0.14 -0.8 227,813 + MPMX19_02968 0.14 -0.3 227,813 + MPMX19_02968 0.14 -0.7 227,813 + MPMX19_02968 0.14 -1.2 227,813 + MPMX19_02968 0.14 -1.3 227,813 + MPMX19_02968 0.14 -0.8 227,813 + MPMX19_02968 0.14 -0.1 227,814 - MPMX19_02968 0.15 -0.1 227,814 - MPMX19_02968 0.15 -1.2 227,814 - MPMX19_02968 0.15 +0.7 227,814 - MPMX19_02968 0.15 +0.5 227,814 - MPMX19_02968 0.15 -2.1 227,814 - MPMX19_02968 0.15 -0.5 227,814 - MPMX19_02968 0.15 +1.4 227,825 + MPMX19_02968 0.15 -1.6 227,825 + MPMX19_02968 0.15 -1.6 227,826 - MPMX19_02968 0.15 +0.5 227,826 - MPMX19_02968 0.15 -0.5 227,826 - MPMX19_02968 0.15 -1.6 227,826 - MPMX19_02968 0.15 -0.8 227,826 - MPMX19_02968 0.15 -2.3 227,903 + MPMX19_02968 0.17 +0.7 227,903 + MPMX19_02968 0.17 +0.4 227,903 + MPMX19_02968 0.17 -0.3 227,904 - MPMX19_02968 0.17 +0.1 228,055 - MPMX19_02968 0.22 -0.7 228,055 - MPMX19_02968 0.22 +0.1 228,055 - MPMX19_02968 0.22 -1.6 228,182 + MPMX19_02968 0.26 +1.3 228,182 + MPMX19_02968 0.26 -0.6 228,182 + MPMX19_02968 0.26 -1.3 228,182 + MPMX19_02968 0.26 -0.8 228,183 - MPMX19_02968 0.26 +0.3 228,183 - MPMX19_02968 0.26 -2.1 228,183 - MPMX19_02968 0.26 -0.8
Or see this region's nucleotide sequence