Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02935 and MPMX19_02936 are separated by 9 nucleotides MPMX19_02936 and MPMX19_02937 are separated by 66 nucleotides MPMX19_02937 and MPMX19_02938 are separated by 24 nucleotides MPMX19_02938 and MPMX19_02939 are separated by 71 nucleotides
MPMX19_02935: MPMX19_02935 - hypothetical protein, at 190,473 to 191,816
_02935
MPMX19_02936: MPMX19_02936 - hypothetical protein, at 191,826 to 192,464
_02936
MPMX19_02937: MPMX19_02937 - hypothetical protein, at 192,531 to 193,034
_02937
MPMX19_02938: MPMX19_02938 - hypothetical protein, at 193,059 to 193,502
_02938
MPMX19_02939: MPMX19_02939 - Putative formate dehydrogenase, at 193,574 to 196,345
_02939
Position (kb) 192
193
194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 191.571 kb on + strand, within MPMX19_02935 at 191.571 kb on + strand, within MPMX19_02935 at 191.571 kb on + strand, within MPMX19_02935 at 191.587 kb on + strand, within MPMX19_02935 at 191.588 kb on - strand, within MPMX19_02935 at 192.215 kb on + strand, within MPMX19_02936 at 192.215 kb on + strand, within MPMX19_02936 at 192.216 kb on - strand, within MPMX19_02936 at 192.455 kb on - strand at 192.729 kb on + strand, within MPMX19_02937 at 192.729 kb on + strand, within MPMX19_02937 at 192.729 kb on + strand, within MPMX19_02937 at 192.730 kb on - strand, within MPMX19_02937 at 192.730 kb on - strand, within MPMX19_02937 at 193.146 kb on + strand, within MPMX19_02938 at 193.167 kb on + strand, within MPMX19_02938 at 193.167 kb on + strand, within MPMX19_02938 at 193.167 kb on + strand, within MPMX19_02938 at 193.167 kb on + strand, within MPMX19_02938 at 193.168 kb on - strand, within MPMX19_02938 at 193.168 kb on - strand, within MPMX19_02938 at 193.168 kb on - strand, within MPMX19_02938 at 193.168 kb on - strand, within MPMX19_02938 at 193.168 kb on - strand, within MPMX19_02938 at 193.299 kb on + strand, within MPMX19_02938 at 193.299 kb on + strand, within MPMX19_02938 at 193.300 kb on - strand, within MPMX19_02938 at 193.300 kb on - strand, within MPMX19_02938 at 193.300 kb on - strand, within MPMX19_02938 at 193.305 kb on + strand, within MPMX19_02938 at 193.305 kb on + strand, within MPMX19_02938 at 193.305 kb on + strand, within MPMX19_02938 at 193.305 kb on + strand, within MPMX19_02938 at 193.305 kb on + strand, within MPMX19_02938 at 193.305 kb on + strand, within MPMX19_02938 at 193.306 kb on - strand, within MPMX19_02938 at 193.306 kb on - strand, within MPMX19_02938 at 193.501 kb on - strand at 193.501 kb on - strand at 193.576 kb on - strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.788 kb on + strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.789 kb on - strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.836 kb on + strand at 193.837 kb on - strand at 193.837 kb on - strand at 193.837 kb on - strand at 193.837 kb on - strand at 193.837 kb on - strand at 193.837 kb on - strand at 193.837 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 191,571 + MPMX19_02935 0.82 +1.0 191,571 + MPMX19_02935 0.82 -1.0 191,571 + MPMX19_02935 0.82 -0.2 191,587 + MPMX19_02935 0.83 +0.5 191,588 - MPMX19_02935 0.83 -2.6 192,215 + MPMX19_02936 0.61 +1.5 192,215 + MPMX19_02936 0.61 -0.5 192,216 - MPMX19_02936 0.61 -0.2 192,455 - -1.5 192,729 + MPMX19_02937 0.39 -2.6 192,729 + MPMX19_02937 0.39 +0.3 192,729 + MPMX19_02937 0.39 -1.2 192,730 - MPMX19_02937 0.39 -1.7 192,730 - MPMX19_02937 0.39 -1.3 193,146 + MPMX19_02938 0.20 -0.8 193,167 + MPMX19_02938 0.24 +0.5 193,167 + MPMX19_02938 0.24 -0.0 193,167 + MPMX19_02938 0.24 +0.4 193,167 + MPMX19_02938 0.24 -1.3 193,168 - MPMX19_02938 0.25 +1.5 193,168 - MPMX19_02938 0.25 +0.4 193,168 - MPMX19_02938 0.25 -1.7 193,168 - MPMX19_02938 0.25 +2.0 193,168 - MPMX19_02938 0.25 -0.0 193,299 + MPMX19_02938 0.54 -0.0 193,299 + MPMX19_02938 0.54 -1.0 193,300 - MPMX19_02938 0.54 -1.0 193,300 - MPMX19_02938 0.54 -1.2 193,300 - MPMX19_02938 0.54 -1.9 193,305 + MPMX19_02938 0.55 -0.3 193,305 + MPMX19_02938 0.55 -2.0 193,305 + MPMX19_02938 0.55 +0.0 193,305 + MPMX19_02938 0.55 +0.7 193,305 + MPMX19_02938 0.55 +0.3 193,305 + MPMX19_02938 0.55 +0.5 193,306 - MPMX19_02938 0.56 -0.6 193,306 - MPMX19_02938 0.56 -0.0 193,501 - +1.1 193,501 - +0.5 193,576 - +1.4 193,788 + -0.3 193,788 + -0.5 193,788 + -0.9 193,788 + -1.6 193,788 + -0.7 193,788 + +0.3 193,788 + +0.1 193,788 + +0.8 193,788 + -0.5 193,789 - -0.7 193,789 - +1.3 193,789 - -1.2 193,789 - +0.1 193,789 - -0.5 193,789 - +0.4 193,789 - +1.1 193,789 - -0.1 193,789 - -0.7 193,789 - -1.3 193,836 + -0.1 193,836 + -1.0 193,836 + -0.2 193,836 + -0.8 193,836 + +0.4 193,836 + +0.4 193,836 + -1.6 193,836 + -0.9 193,836 + -0.4 193,836 + -0.2 193,836 + -0.2 193,836 + -1.5 193,836 + -0.2 193,836 + -1.0 193,837 - -0.5 193,837 - -0.9 193,837 - +0.7 193,837 - -1.6 193,837 - -1.6 193,837 - +0.0 193,837 - -1.2
Or see this region's nucleotide sequence