Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01706 and MPMX19_01707 overlap by 4 nucleotides MPMX19_01707 and MPMX19_01708 are separated by 131 nucleotides MPMX19_01708 and MPMX19_01709 are separated by 19 nucleotides MPMX19_01709 and MPMX19_01710 are separated by 76 nucleotides
MPMX19_01706: MPMX19_01706 - hypothetical protein, at 1,799,821 to 1,800,747
_01706
MPMX19_01707: MPMX19_01707 - Phosphatidylserine decarboxylase proenzyme, at 1,800,744 to 1,801,442
_01707
MPMX19_01708: MPMX19_01708 - hypothetical protein, at 1,801,574 to 1,802,044
_01708
MPMX19_01709: MPMX19_01709 - hypothetical protein, at 1,802,064 to 1,802,504
_01709
MPMX19_01710: MPMX19_01710 - Purine-binding protein, at 1,802,581 to 1,803,684
_01710
Position (kb) 1801
1802
1803 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1801.459 kb on - strand at 1801.459 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.488 kb on - strand at 1801.519 kb on - strand at 1801.519 kb on - strand at 1801.652 kb on - strand, within MPMX19_01708 at 1801.652 kb on - strand, within MPMX19_01708 at 1801.820 kb on + strand, within MPMX19_01708 at 1801.820 kb on + strand, within MPMX19_01708 at 1801.820 kb on + strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1801.821 kb on - strand, within MPMX19_01708 at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.036 kb on + strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.037 kb on - strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.042 kb on + strand at 1802.043 kb on - strand at 1802.343 kb on + strand, within MPMX19_01709 at 1802.470 kb on + strand at 1802.470 kb on + strand at 1802.470 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.485 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.582 kb on + strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.583 kb on - strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.615 kb on + strand at 1802.616 kb on - strand at 1802.616 kb on - strand at 1802.616 kb on - strand at 1802.616 kb on - strand at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.786 kb on + strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.787 kb on - strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.879 kb on + strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.880 kb on - strand, within MPMX19_01710 at 1802.882 kb on + strand, within MPMX19_01710 at 1802.882 kb on + strand, within MPMX19_01710 at 1802.882 kb on + strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1802.883 kb on - strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.009 kb on + strand, within MPMX19_01710 at 1803.010 kb on - strand, within MPMX19_01710 at 1803.010 kb on - strand, within MPMX19_01710 at 1803.010 kb on - strand, within MPMX19_01710
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 1,801,459 - -0.6 1,801,459 - -1.3 1,801,488 - +0.7 1,801,488 - -1.8 1,801,488 - -0.1 1,801,488 - -1.9 1,801,488 - -0.4 1,801,488 - +0.3 1,801,488 - -0.4 1,801,488 - -0.2 1,801,519 - +0.7 1,801,519 - -1.5 1,801,652 - MPMX19_01708 0.17 -1.1 1,801,652 - MPMX19_01708 0.17 -0.6 1,801,820 + MPMX19_01708 0.52 -1.5 1,801,820 + MPMX19_01708 0.52 +0.2 1,801,820 + MPMX19_01708 0.52 +1.7 1,801,821 - MPMX19_01708 0.52 +2.5 1,801,821 - MPMX19_01708 0.52 +0.3 1,801,821 - MPMX19_01708 0.52 -1.0 1,801,821 - MPMX19_01708 0.52 -0.5 1,801,821 - MPMX19_01708 0.52 -0.1 1,802,036 + +1.0 1,802,036 + -1.6 1,802,036 + +0.4 1,802,036 + -0.7 1,802,036 + -0.6 1,802,036 + -0.1 1,802,036 + +0.1 1,802,036 + -0.3 1,802,036 + +0.1 1,802,036 + -0.5 1,802,036 + +0.3 1,802,037 - +3.1 1,802,037 - -2.1 1,802,037 - +0.1 1,802,037 - -0.5 1,802,037 - +0.4 1,802,037 - -1.1 1,802,037 - -2.8 1,802,037 - +0.4 1,802,037 - -0.8 1,802,037 - -0.0 1,802,037 - +0.1 1,802,037 - -1.0 1,802,037 - +1.9 1,802,037 - -0.1 1,802,042 + -1.3 1,802,042 + +0.3 1,802,042 + -0.2 1,802,042 + -1.7 1,802,042 + -1.9 1,802,042 + +0.3 1,802,043 - -0.5 1,802,343 + MPMX19_01709 0.63 -0.1 1,802,470 + -0.4 1,802,470 + -0.8 1,802,470 + +1.0 1,802,485 + +0.1 1,802,485 + -1.7 1,802,485 + +0.1 1,802,485 + +0.1 1,802,485 + +0.2 1,802,485 + +0.1 1,802,485 + +0.3 1,802,485 + -0.4 1,802,485 + -0.2 1,802,485 + +0.2 1,802,485 + -1.5 1,802,485 + +0.8 1,802,485 + +1.8 1,802,582 + -0.8 1,802,582 + -0.2 1,802,582 + +1.9 1,802,582 + -1.6 1,802,582 + +1.3 1,802,582 + -1.2 1,802,582 + -0.5 1,802,582 + +0.5 1,802,582 + -1.5 1,802,582 + +0.1 1,802,583 - -0.5 1,802,583 - -0.1 1,802,583 - +0.5 1,802,583 - -1.4 1,802,583 - +0.8 1,802,583 - +0.2 1,802,583 - -0.7 1,802,583 - -1.0 1,802,583 - -0.4 1,802,583 - -0.2 1,802,583 - -2.3 1,802,583 - +1.1 1,802,615 + +1.0 1,802,615 + -0.1 1,802,615 + +0.9 1,802,615 + -0.5 1,802,615 + +0.9 1,802,616 - +1.0 1,802,616 - -0.1 1,802,616 - -2.3 1,802,616 - +0.3 1,802,786 + MPMX19_01710 0.19 +0.4 1,802,786 + MPMX19_01710 0.19 -0.7 1,802,786 + MPMX19_01710 0.19 +0.0 1,802,786 + MPMX19_01710 0.19 -0.7 1,802,786 + MPMX19_01710 0.19 -1.5 1,802,786 + MPMX19_01710 0.19 +0.3 1,802,786 + MPMX19_01710 0.19 -0.2 1,802,787 - MPMX19_01710 0.19 -1.9 1,802,787 - MPMX19_01710 0.19 -0.6 1,802,787 - MPMX19_01710 0.19 +0.8 1,802,787 - MPMX19_01710 0.19 +0.0 1,802,787 - MPMX19_01710 0.19 +0.5 1,802,787 - MPMX19_01710 0.19 -1.6 1,802,787 - MPMX19_01710 0.19 +0.9 1,802,787 - MPMX19_01710 0.19 -0.1 1,802,787 - MPMX19_01710 0.19 +0.2 1,802,787 - MPMX19_01710 0.19 -0.8 1,802,787 - MPMX19_01710 0.19 -1.5 1,802,787 - MPMX19_01710 0.19 -0.3 1,802,787 - MPMX19_01710 0.19 -1.3 1,802,787 - MPMX19_01710 0.19 -0.6 1,802,879 + MPMX19_01710 0.27 +0.2 1,802,879 + MPMX19_01710 0.27 -0.5 1,802,879 + MPMX19_01710 0.27 +0.3 1,802,879 + MPMX19_01710 0.27 -2.7 1,802,879 + MPMX19_01710 0.27 +0.5 1,802,879 + MPMX19_01710 0.27 +0.9 1,802,879 + MPMX19_01710 0.27 -3.3 1,802,879 + MPMX19_01710 0.27 +0.3 1,802,879 + MPMX19_01710 0.27 -1.3 1,802,879 + MPMX19_01710 0.27 +0.5 1,802,879 + MPMX19_01710 0.27 -0.5 1,802,879 + MPMX19_01710 0.27 +0.0 1,802,879 + MPMX19_01710 0.27 +0.3 1,802,879 + MPMX19_01710 0.27 +0.6 1,802,879 + MPMX19_01710 0.27 -2.1 1,802,879 + MPMX19_01710 0.27 -0.1 1,802,879 + MPMX19_01710 0.27 +0.0 1,802,879 + MPMX19_01710 0.27 +0.3 1,802,879 + MPMX19_01710 0.27 -0.2 1,802,879 + MPMX19_01710 0.27 -1.1 1,802,879 + MPMX19_01710 0.27 -0.4 1,802,879 + MPMX19_01710 0.27 +0.8 1,802,879 + MPMX19_01710 0.27 -0.3 1,802,879 + MPMX19_01710 0.27 +1.1 1,802,879 + MPMX19_01710 0.27 +0.5 1,802,879 + MPMX19_01710 0.27 +0.0 1,802,879 + MPMX19_01710 0.27 -2.3 1,802,880 - MPMX19_01710 0.27 +0.3 1,802,880 - MPMX19_01710 0.27 +0.4 1,802,880 - MPMX19_01710 0.27 +1.0 1,802,880 - MPMX19_01710 0.27 +0.1 1,802,880 - MPMX19_01710 0.27 -0.4 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 -1.7 1,802,880 - MPMX19_01710 0.27 +0.5 1,802,880 - MPMX19_01710 0.27 -0.0 1,802,880 - MPMX19_01710 0.27 +0.1 1,802,880 - MPMX19_01710 0.27 +1.3 1,802,880 - MPMX19_01710 0.27 -1.6 1,802,880 - MPMX19_01710 0.27 +1.1 1,802,880 - MPMX19_01710 0.27 -0.1 1,802,880 - MPMX19_01710 0.27 -0.1 1,802,880 - MPMX19_01710 0.27 +0.1 1,802,880 - MPMX19_01710 0.27 -0.4 1,802,880 - MPMX19_01710 0.27 -0.4 1,802,880 - MPMX19_01710 0.27 +0.4 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 +0.2 1,802,880 - MPMX19_01710 0.27 -1.0 1,802,880 - MPMX19_01710 0.27 -1.5 1,802,880 - MPMX19_01710 0.27 +1.5 1,802,880 - MPMX19_01710 0.27 -1.2 1,802,880 - MPMX19_01710 0.27 -0.6 1,802,880 - MPMX19_01710 0.27 -1.4 1,802,880 - MPMX19_01710 0.27 -0.3 1,802,880 - MPMX19_01710 0.27 -1.0 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 -1.7 1,802,880 - MPMX19_01710 0.27 -0.4 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 +0.3 1,802,880 - MPMX19_01710 0.27 -0.9 1,802,880 - MPMX19_01710 0.27 +0.1 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,880 - MPMX19_01710 0.27 +0.1 1,802,880 - MPMX19_01710 0.27 -1.6 1,802,880 - MPMX19_01710 0.27 -0.1 1,802,880 - MPMX19_01710 0.27 -0.3 1,802,880 - MPMX19_01710 0.27 -1.4 1,802,880 - MPMX19_01710 0.27 -0.5 1,802,882 + MPMX19_01710 0.27 +1.3 1,802,882 + MPMX19_01710 0.27 -0.7 1,802,882 + MPMX19_01710 0.27 -1.1 1,802,883 - MPMX19_01710 0.27 -0.8 1,802,883 - MPMX19_01710 0.27 -0.3 1,802,883 - MPMX19_01710 0.27 +0.6 1,802,883 - MPMX19_01710 0.27 +0.3 1,803,009 + MPMX19_01710 0.39 -1.3 1,803,009 + MPMX19_01710 0.39 -2.8 1,803,009 + MPMX19_01710 0.39 -0.4 1,803,009 + MPMX19_01710 0.39 +0.9 1,803,009 + MPMX19_01710 0.39 -1.8 1,803,009 + MPMX19_01710 0.39 -1.4 1,803,010 - MPMX19_01710 0.39 -0.5 1,803,010 - MPMX19_01710 0.39 -2.7 1,803,010 - MPMX19_01710 0.39 -0.7
Or see this region's nucleotide sequence