Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00936 and MPMX19_00937 are separated by 257 nucleotides MPMX19_00937 and MPMX19_00938 are separated by 41 nucleotides MPMX19_00938 and MPMX19_00939 are separated by 188 nucleotides
MPMX19_00936: MPMX19_00936 - hypothetical protein, at 972,828 to 973,814
_00936
MPMX19_00937: MPMX19_00937 - Malonyl CoA-acyl carrier protein transacylase, at 974,072 to 975,013
_00937
MPMX19_00938: MPMX19_00938 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 975,055 to 975,792
_00938
MPMX19_00939: MPMX19_00939 - Acyl carrier protein, at 975,981 to 976,220
_00939
Position (kb) 974
975
976 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.119 kb on + strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.120 kb on - strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.185 kb on + strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.186 kb on - strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.191 kb on + strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.192 kb on - strand, within MPMX19_00936 at 973.197 kb on + strand, within MPMX19_00936 at 973.197 kb on + strand, within MPMX19_00936 at 973.197 kb on + strand, within MPMX19_00936 at 973.198 kb on - strand, within MPMX19_00936 at 973.198 kb on - strand, within MPMX19_00936 at 973.198 kb on - strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.212 kb on + strand, within MPMX19_00936 at 973.213 kb on - strand, within MPMX19_00936 at 973.213 kb on - strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.349 kb on + strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.350 kb on - strand, within MPMX19_00936 at 973.509 kb on + strand, within MPMX19_00936 at 973.509 kb on + strand, within MPMX19_00936 at 973.509 kb on + strand, within MPMX19_00936 at 973.509 kb on + strand, within MPMX19_00936 at 973.509 kb on + strand, within MPMX19_00936 at 973.509 kb on + strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.510 kb on - strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.583 kb on + strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.584 kb on - strand, within MPMX19_00936 at 973.629 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.638 kb on + strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.639 kb on - strand, within MPMX19_00936 at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.933 kb on + strand at 973.945 kb on + strand at 973.945 kb on + strand at 973.945 kb on + strand at 975.017 kb on + strand at 975.017 kb on + strand at 975.017 kb on + strand at 975.017 kb on + strand at 975.017 kb on + strand at 975.017 kb on + strand at 975.017 kb on + strand at 975.031 kb on + strand at 975.031 kb on + strand at 975.031 kb on + strand at 975.031 kb on + strand at 975.031 kb on + strand at 975.031 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 973,119 + MPMX19_00936 0.29 -0.2 973,119 + MPMX19_00936 0.29 -0.5 973,119 + MPMX19_00936 0.29 -0.3 973,119 + MPMX19_00936 0.29 -0.1 973,119 + MPMX19_00936 0.29 -0.4 973,119 + MPMX19_00936 0.29 -2.5 973,119 + MPMX19_00936 0.29 -0.3 973,120 - MPMX19_00936 0.30 -0.9 973,120 - MPMX19_00936 0.30 -2.8 973,120 - MPMX19_00936 0.30 +0.5 973,120 - MPMX19_00936 0.30 +0.0 973,120 - MPMX19_00936 0.30 -0.2 973,120 - MPMX19_00936 0.30 -1.5 973,120 - MPMX19_00936 0.30 -0.3 973,120 - MPMX19_00936 0.30 +0.3 973,120 - MPMX19_00936 0.30 -2.1 973,120 - MPMX19_00936 0.30 +0.8 973,185 + MPMX19_00936 0.36 +0.5 973,185 + MPMX19_00936 0.36 -0.9 973,185 + MPMX19_00936 0.36 -0.9 973,185 + MPMX19_00936 0.36 +0.6 973,185 + MPMX19_00936 0.36 +0.9 973,185 + MPMX19_00936 0.36 -0.9 973,185 + MPMX19_00936 0.36 -0.5 973,185 + MPMX19_00936 0.36 -1.8 973,185 + MPMX19_00936 0.36 -0.4 973,185 + MPMX19_00936 0.36 -0.1 973,185 + MPMX19_00936 0.36 +1.8 973,185 + MPMX19_00936 0.36 -2.2 973,185 + MPMX19_00936 0.36 -0.7 973,185 + MPMX19_00936 0.36 +0.3 973,185 + MPMX19_00936 0.36 -0.6 973,185 + MPMX19_00936 0.36 +0.6 973,186 - MPMX19_00936 0.36 -0.2 973,186 - MPMX19_00936 0.36 +1.1 973,186 - MPMX19_00936 0.36 +0.9 973,186 - MPMX19_00936 0.36 -1.4 973,186 - MPMX19_00936 0.36 -1.8 973,186 - MPMX19_00936 0.36 -2.0 973,186 - MPMX19_00936 0.36 -0.0 973,186 - MPMX19_00936 0.36 -1.0 973,186 - MPMX19_00936 0.36 -0.9 973,186 - MPMX19_00936 0.36 -0.4 973,191 + MPMX19_00936 0.37 -1.1 973,191 + MPMX19_00936 0.37 +0.9 973,191 + MPMX19_00936 0.37 -0.4 973,191 + MPMX19_00936 0.37 -1.1 973,191 + MPMX19_00936 0.37 -0.4 973,191 + MPMX19_00936 0.37 -1.4 973,191 + MPMX19_00936 0.37 -0.9 973,192 - MPMX19_00936 0.37 -0.1 973,192 - MPMX19_00936 0.37 +1.2 973,192 - MPMX19_00936 0.37 +0.2 973,192 - MPMX19_00936 0.37 -2.0 973,192 - MPMX19_00936 0.37 -1.3 973,197 + MPMX19_00936 0.37 +0.0 973,197 + MPMX19_00936 0.37 +1.9 973,197 + MPMX19_00936 0.37 -1.7 973,198 - MPMX19_00936 0.37 +0.0 973,198 - MPMX19_00936 0.37 +0.3 973,198 - MPMX19_00936 0.37 -1.3 973,212 + MPMX19_00936 0.39 -0.7 973,212 + MPMX19_00936 0.39 +1.2 973,212 + MPMX19_00936 0.39 +0.5 973,212 + MPMX19_00936 0.39 -0.2 973,213 - MPMX19_00936 0.39 -1.7 973,213 - MPMX19_00936 0.39 -0.7 973,349 + MPMX19_00936 0.53 +0.5 973,349 + MPMX19_00936 0.53 -0.5 973,349 + MPMX19_00936 0.53 +1.2 973,349 + MPMX19_00936 0.53 +0.3 973,350 - MPMX19_00936 0.53 +0.5 973,350 - MPMX19_00936 0.53 -0.6 973,350 - MPMX19_00936 0.53 +0.1 973,350 - MPMX19_00936 0.53 -1.0 973,350 - MPMX19_00936 0.53 +0.5 973,350 - MPMX19_00936 0.53 -0.5 973,350 - MPMX19_00936 0.53 -0.1 973,350 - MPMX19_00936 0.53 +1.0 973,350 - MPMX19_00936 0.53 +0.9 973,350 - MPMX19_00936 0.53 -1.8 973,350 - MPMX19_00936 0.53 +0.6 973,509 + MPMX19_00936 0.69 -0.3 973,509 + MPMX19_00936 0.69 +0.2 973,509 + MPMX19_00936 0.69 -0.0 973,509 + MPMX19_00936 0.69 +0.2 973,509 + MPMX19_00936 0.69 -0.7 973,509 + MPMX19_00936 0.69 -0.1 973,510 - MPMX19_00936 0.69 -0.8 973,510 - MPMX19_00936 0.69 -0.7 973,510 - MPMX19_00936 0.69 -1.1 973,510 - MPMX19_00936 0.69 -0.9 973,510 - MPMX19_00936 0.69 +0.5 973,510 - MPMX19_00936 0.69 -1.0 973,510 - MPMX19_00936 0.69 +0.9 973,583 + MPMX19_00936 0.76 -0.7 973,583 + MPMX19_00936 0.76 -0.9 973,583 + MPMX19_00936 0.76 -0.8 973,583 + MPMX19_00936 0.76 +0.5 973,583 + MPMX19_00936 0.76 -0.4 973,583 + MPMX19_00936 0.76 -0.5 973,583 + MPMX19_00936 0.76 -0.9 973,583 + MPMX19_00936 0.76 +0.4 973,583 + MPMX19_00936 0.76 -0.1 973,583 + MPMX19_00936 0.76 -1.5 973,583 + MPMX19_00936 0.76 +0.1 973,583 + MPMX19_00936 0.76 +1.9 973,583 + MPMX19_00936 0.76 -1.1 973,583 + MPMX19_00936 0.76 +0.8 973,583 + MPMX19_00936 0.76 -1.1 973,583 + MPMX19_00936 0.76 -1.2 973,583 + MPMX19_00936 0.76 +1.5 973,583 + MPMX19_00936 0.76 -0.5 973,583 + MPMX19_00936 0.76 -0.3 973,583 + MPMX19_00936 0.76 +1.2 973,584 - MPMX19_00936 0.77 -0.1 973,584 - MPMX19_00936 0.77 +0.8 973,584 - MPMX19_00936 0.77 -0.8 973,584 - MPMX19_00936 0.77 +0.0 973,584 - MPMX19_00936 0.77 +0.1 973,584 - MPMX19_00936 0.77 -1.0 973,584 - MPMX19_00936 0.77 -1.2 973,584 - MPMX19_00936 0.77 -0.1 973,584 - MPMX19_00936 0.77 -0.1 973,584 - MPMX19_00936 0.77 -0.1 973,584 - MPMX19_00936 0.77 -0.9 973,584 - MPMX19_00936 0.77 -0.3 973,584 - MPMX19_00936 0.77 -1.2 973,584 - MPMX19_00936 0.77 +0.1 973,584 - MPMX19_00936 0.77 +0.3 973,584 - MPMX19_00936 0.77 -1.0 973,584 - MPMX19_00936 0.77 +0.9 973,584 - MPMX19_00936 0.77 -2.0 973,584 - MPMX19_00936 0.77 +0.7 973,584 - MPMX19_00936 0.77 -0.7 973,584 - MPMX19_00936 0.77 -0.5 973,584 - MPMX19_00936 0.77 +0.6 973,584 - MPMX19_00936 0.77 -0.6 973,584 - MPMX19_00936 0.77 -0.0 973,584 - MPMX19_00936 0.77 +1.5 973,584 - MPMX19_00936 0.77 -0.9 973,584 - MPMX19_00936 0.77 -2.2 973,629 + MPMX19_00936 0.81 -0.4 973,638 + MPMX19_00936 0.82 -0.6 973,638 + MPMX19_00936 0.82 -0.5 973,638 + MPMX19_00936 0.82 +0.0 973,638 + MPMX19_00936 0.82 -0.7 973,638 + MPMX19_00936 0.82 -1.0 973,638 + MPMX19_00936 0.82 +0.4 973,638 + MPMX19_00936 0.82 +0.4 973,638 + MPMX19_00936 0.82 +0.1 973,638 + MPMX19_00936 0.82 -1.9 973,638 + MPMX19_00936 0.82 -1.0 973,638 + MPMX19_00936 0.82 +0.6 973,638 + MPMX19_00936 0.82 -1.5 973,638 + MPMX19_00936 0.82 -0.7 973,638 + MPMX19_00936 0.82 +1.6 973,638 + MPMX19_00936 0.82 -1.0 973,639 - MPMX19_00936 0.82 -2.8 973,639 - MPMX19_00936 0.82 -0.1 973,639 - MPMX19_00936 0.82 -0.6 973,639 - MPMX19_00936 0.82 -0.1 973,639 - MPMX19_00936 0.82 -1.4 973,639 - MPMX19_00936 0.82 +0.1 973,639 - MPMX19_00936 0.82 -0.4 973,639 - MPMX19_00936 0.82 -0.5 973,639 - MPMX19_00936 0.82 -0.6 973,639 - MPMX19_00936 0.82 -0.1 973,639 - MPMX19_00936 0.82 -1.4 973,933 + -0.7 973,933 + +0.5 973,933 + -1.7 973,933 + -1.5 973,933 + -0.2 973,933 + +0.1 973,933 + +0.1 973,933 + -0.8 973,933 + -0.8 973,933 + +0.2 973,933 + -0.4 973,933 + -0.4 973,933 + -0.4 973,933 + +0.6 973,933 + +0.0 973,933 + -0.1 973,933 + -2.2 973,933 + -0.5 973,933 + -0.9 973,933 + +0.6 973,933 + -0.5 973,933 + +0.1 973,933 + -0.7 973,933 + -1.2 973,933 + +0.4 973,933 + +0.4 973,933 + +0.0 973,933 + -0.1 973,933 + +0.5 973,933 + -0.1 973,933 + -2.9 973,933 + -1.1 973,933 + -2.6 973,933 + +0.5 973,945 + +0.1 973,945 + +0.5 973,945 + +2.8 975,017 + -0.4 975,017 + -0.3 975,017 + +0.6 975,017 + -1.0 975,017 + -1.2 975,017 + +0.5 975,017 + +1.1 975,031 + -0.4 975,031 + -0.9 975,031 + -2.4 975,031 + +0.6 975,031 + -1.1 975,031 + +0.2
Or see this region's nucleotide sequence