Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00179 and MPMX19_00180 are separated by 55 nucleotides MPMX19_00180 and MPMX19_00181 are separated by 2 nucleotides MPMX19_00181 and MPMX19_00182 are separated by 74 nucleotides MPMX19_00182 and MPMX19_00183 overlap by 1 nucleotides
MPMX19_00179: MPMX19_00179 - hypothetical protein, at 189,769 to 190,614
_00179
MPMX19_00180: MPMX19_00180 - hypothetical protein, at 190,670 to 191,221
_00180
MPMX19_00181: MPMX19_00181 - hypothetical protein, at 191,224 to 191,490
_00181
MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326
_00182
MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571
_00183
Position (kb) 191
192 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.335 kb on + strand, within MPMX19_00179 at 190.336 kb on - strand, within MPMX19_00179 at 190.336 kb on - strand, within MPMX19_00179 at 190.336 kb on - strand, within MPMX19_00179 at 190.336 kb on - strand, within MPMX19_00179 at 190.444 kb on + strand, within MPMX19_00179 at 190.445 kb on - strand, within MPMX19_00179 at 190.445 kb on - strand, within MPMX19_00179 at 190.445 kb on - strand, within MPMX19_00179 at 190.445 kb on - strand, within MPMX19_00179 at 190.445 kb on - strand, within MPMX19_00179 at 190.445 kb on - strand, within MPMX19_00179 at 190.446 kb on + strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.447 kb on - strand, within MPMX19_00179 at 190.513 kb on - strand, within MPMX19_00179 at 190.526 kb on - strand, within MPMX19_00179 at 190.529 kb on - strand, within MPMX19_00179 at 190.556 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.607 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.613 kb on - strand at 190.641 kb on + strand at 190.642 kb on - strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.655 kb on + strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.656 kb on - strand at 190.906 kb on + strand, within MPMX19_00180 at 190.907 kb on - strand, within MPMX19_00180 at 190.907 kb on - strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.920 kb on + strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.921 kb on - strand, within MPMX19_00180 at 190.931 kb on + strand, within MPMX19_00180 at 190.931 kb on + strand, within MPMX19_00180 at 190.931 kb on + strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 190.932 kb on - strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.105 kb on + strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.106 kb on - strand, within MPMX19_00180 at 191.125 kb on + strand, within MPMX19_00180 at 191.125 kb on + strand, within MPMX19_00180 at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.182 kb on + strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.183 kb on - strand at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.311 kb on + strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.312 kb on - strand, within MPMX19_00181 at 191.631 kb on + strand at 191.632 kb on - strand at 191.674 kb on - strand, within MPMX19_00182 at 191.714 kb on - strand, within MPMX19_00182 at 191.714 kb on - strand, within MPMX19_00182 at 191.770 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182 at 191.840 kb on + strand, within MPMX19_00182
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 190,335 + MPMX19_00179 0.67 -0.7 190,336 - MPMX19_00179 0.67 -1.0 190,336 - MPMX19_00179 0.67 -1.2 190,336 - MPMX19_00179 0.67 -0.1 190,336 - MPMX19_00179 0.67 -1.2 190,444 + MPMX19_00179 0.80 +0.5 190,445 - MPMX19_00179 0.80 -1.5 190,445 - MPMX19_00179 0.80 -1.6 190,445 - MPMX19_00179 0.80 -1.5 190,445 - MPMX19_00179 0.80 +2.4 190,445 - MPMX19_00179 0.80 -0.3 190,445 - MPMX19_00179 0.80 -1.2 190,446 + MPMX19_00179 0.80 -0.1 190,447 - MPMX19_00179 0.80 +0.5 190,447 - MPMX19_00179 0.80 -1.2 190,447 - MPMX19_00179 0.80 -0.7 190,447 - MPMX19_00179 0.80 +0.8 190,447 - MPMX19_00179 0.80 -0.1 190,447 - MPMX19_00179 0.80 -0.9 190,447 - MPMX19_00179 0.80 -2.5 190,447 - MPMX19_00179 0.80 +0.6 190,447 - MPMX19_00179 0.80 -0.9 190,447 - MPMX19_00179 0.80 -0.4 190,447 - MPMX19_00179 0.80 -0.1 190,447 - MPMX19_00179 0.80 +0.1 190,447 - MPMX19_00179 0.80 +0.9 190,447 - MPMX19_00179 0.80 -0.7 190,447 - MPMX19_00179 0.80 +0.4 190,447 - MPMX19_00179 0.80 +0.1 190,447 - MPMX19_00179 0.80 -1.5 190,447 - MPMX19_00179 0.80 +1.6 190,447 - MPMX19_00179 0.80 -1.9 190,447 - MPMX19_00179 0.80 -0.9 190,447 - MPMX19_00179 0.80 -0.3 190,513 - MPMX19_00179 0.88 -0.4 190,526 - MPMX19_00179 0.89 +0.3 190,529 - MPMX19_00179 0.90 -1.9 190,556 - -1.2 190,607 - +0.3 190,607 - -2.1 190,607 - +0.1 190,607 - +0.2 190,607 - +0.6 190,613 - -0.8 190,613 - +0.2 190,613 - +0.6 190,613 - -0.7 190,613 - +0.3 190,613 - -2.3 190,641 + +1.2 190,642 - -0.6 190,655 + -0.1 190,655 + -1.2 190,655 + -0.8 190,655 + -0.2 190,655 + -1.6 190,655 + -1.5 190,655 + -1.4 190,655 + +0.2 190,655 + -2.2 190,656 - +0.4 190,656 - +1.6 190,656 - -0.0 190,656 - -0.6 190,656 - -0.9 190,906 + MPMX19_00180 0.43 -2.1 190,907 - MPMX19_00180 0.43 +0.6 190,907 - MPMX19_00180 0.43 -1.5 190,920 + MPMX19_00180 0.45 +1.3 190,920 + MPMX19_00180 0.45 -0.8 190,920 + MPMX19_00180 0.45 +2.1 190,920 + MPMX19_00180 0.45 -0.1 190,920 + MPMX19_00180 0.45 +2.1 190,920 + MPMX19_00180 0.45 -0.4 190,920 + MPMX19_00180 0.45 -1.5 190,921 - MPMX19_00180 0.45 -1.3 190,921 - MPMX19_00180 0.45 -1.8 190,921 - MPMX19_00180 0.45 -1.7 190,921 - MPMX19_00180 0.45 -1.1 190,921 - MPMX19_00180 0.45 -0.4 190,921 - MPMX19_00180 0.45 +1.6 190,921 - MPMX19_00180 0.45 +1.6 190,931 + MPMX19_00180 0.47 +1.2 190,931 + MPMX19_00180 0.47 -0.4 190,931 + MPMX19_00180 0.47 +0.1 190,932 - MPMX19_00180 0.47 +2.2 190,932 - MPMX19_00180 0.47 -3.3 190,932 - MPMX19_00180 0.47 -0.8 190,932 - MPMX19_00180 0.47 -0.6 190,932 - MPMX19_00180 0.47 -0.6 190,932 - MPMX19_00180 0.47 +0.1 190,932 - MPMX19_00180 0.47 -1.6 190,932 - MPMX19_00180 0.47 -0.7 191,105 + MPMX19_00180 0.79 +0.3 191,105 + MPMX19_00180 0.79 +0.1 191,105 + MPMX19_00180 0.79 -0.2 191,105 + MPMX19_00180 0.79 -0.3 191,105 + MPMX19_00180 0.79 +0.2 191,105 + MPMX19_00180 0.79 -0.4 191,105 + MPMX19_00180 0.79 -0.4 191,105 + MPMX19_00180 0.79 -0.4 191,105 + MPMX19_00180 0.79 -0.6 191,105 + MPMX19_00180 0.79 -0.4 191,105 + MPMX19_00180 0.79 -1.7 191,106 - MPMX19_00180 0.79 +0.3 191,106 - MPMX19_00180 0.79 -0.7 191,106 - MPMX19_00180 0.79 -1.0 191,106 - MPMX19_00180 0.79 -1.1 191,106 - MPMX19_00180 0.79 -0.7 191,106 - MPMX19_00180 0.79 -0.8 191,106 - MPMX19_00180 0.79 -0.2 191,125 + MPMX19_00180 0.82 -0.1 191,125 + MPMX19_00180 0.82 -1.1 191,182 + -0.4 191,182 + -0.2 191,182 + -0.7 191,182 + -0.4 191,182 + +0.1 191,182 + +1.1 191,182 + +0.6 191,182 + -0.5 191,182 + +1.3 191,182 + -1.4 191,182 + -0.2 191,182 + +0.3 191,182 + -1.5 191,182 + -0.7 191,182 + -1.4 191,182 + -1.2 191,182 + +0.2 191,182 + +0.6 191,183 - -1.5 191,183 - -0.9 191,183 - +0.5 191,183 - -1.2 191,183 - -0.2 191,183 - -0.7 191,183 - -2.0 191,183 - -1.8 191,183 - -0.9 191,183 - +0.5 191,183 - +0.1 191,183 - -0.9 191,183 - -0.4 191,311 + MPMX19_00181 0.33 +0.2 191,311 + MPMX19_00181 0.33 -0.8 191,311 + MPMX19_00181 0.33 -0.2 191,311 + MPMX19_00181 0.33 -1.2 191,311 + MPMX19_00181 0.33 -0.9 191,311 + MPMX19_00181 0.33 -1.8 191,311 + MPMX19_00181 0.33 +0.4 191,312 - MPMX19_00181 0.33 +0.2 191,312 - MPMX19_00181 0.33 -2.6 191,312 - MPMX19_00181 0.33 -1.3 191,312 - MPMX19_00181 0.33 -0.9 191,312 - MPMX19_00181 0.33 -1.6 191,312 - MPMX19_00181 0.33 -1.5 191,312 - MPMX19_00181 0.33 -0.5 191,312 - MPMX19_00181 0.33 -0.4 191,312 - MPMX19_00181 0.33 +0.2 191,631 + +0.6 191,632 - -1.5 191,674 - MPMX19_00182 0.14 -1.7 191,714 - MPMX19_00182 0.20 +0.8 191,714 - MPMX19_00182 0.20 -0.4 191,770 + MPMX19_00182 0.27 +0.2 191,840 + MPMX19_00182 0.36 -2.1 191,840 + MPMX19_00182 0.36 -0.5
Or see this region's nucleotide sequence