Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS44200 and QEN71_RS44205 are separated by 6 nucleotides QEN71_RS44205 and QEN71_RS44210 are separated by 120 nucleotides QEN71_RS44210 and QEN71_RS44215 overlap by 7 nucleotides QEN71_RS44215 and QEN71_RS44220 are separated by 831 nucleotides
QEN71_RS44200: QEN71_RS44200 - IS21 family transposase, at 316,809 to 317,920
_RS44200
QEN71_RS44205: QEN71_RS44205 - IS21-like element helper ATPase IstB, at 317,927 to 318,715
_RS44205
QEN71_RS44210: QEN71_RS44210 - transposase, at 318,836 to 318,979
_RS44210
QEN71_RS44215: QEN71_RS44215 - IS5/IS1182 family transposase, at 318,973 to 319,113
_RS44215
QEN71_RS44220: QEN71_RS44220 - RolB family protein, at 319,945 to 320,592
_RS44220
Position (kb) 318
319 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.863 kb on + strand at 317.864 kb on - strand at 317.867 kb on + strand at 317.868 kb on - strand at 318.036 kb on - strand, within QEN71_RS44205 at 318.036 kb on - strand, within QEN71_RS44205 at 318.212 kb on + strand, within QEN71_RS44205 at 318.213 kb on - strand, within QEN71_RS44205 at 318.213 kb on - strand, within QEN71_RS44205 at 318.214 kb on + strand, within QEN71_RS44205 at 318.376 kb on + strand, within QEN71_RS44205 at 318.380 kb on + strand, within QEN71_RS44205 at 318.380 kb on + strand, within QEN71_RS44205 at 318.380 kb on + strand, within QEN71_RS44205 at 318.381 kb on - strand, within QEN71_RS44205 at 318.381 kb on - strand, within QEN71_RS44205 at 318.381 kb on - strand, within QEN71_RS44205 at 318.381 kb on - strand, within QEN71_RS44205 at 318.381 kb on - strand, within QEN71_RS44205 at 318.412 kb on - strand, within QEN71_RS44205 at 318.497 kb on + strand, within QEN71_RS44205 at 318.526 kb on + strand, within QEN71_RS44205 at 318.601 kb on - strand, within QEN71_RS44205 at 318.784 kb on + strand at 318.803 kb on + strand at 318.803 kb on + strand at 318.803 kb on + strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.804 kb on - strand at 318.825 kb on - strand at 318.825 kb on - strand at 318.838 kb on - strand at 318.863 kb on - strand, within QEN71_RS44210 at 318.863 kb on - strand, within QEN71_RS44210 at 318.876 kb on - strand, within QEN71_RS44210 at 319.134 kb on - strand at 319.134 kb on - strand at 319.147 kb on + strand at 319.157 kb on + strand at 319.195 kb on + strand at 319.195 kb on + strand at 319.232 kb on + strand at 319.296 kb on + strand at 319.297 kb on - strand at 319.304 kb on - strand at 319.424 kb on - strand at 319.428 kb on + strand at 319.429 kb on - strand at 319.429 kb on - strand at 319.429 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.442 kb on - strand at 319.494 kb on + strand at 319.495 kb on - strand at 319.495 kb on - strand at 319.500 kb on - strand at 319.500 kb on - strand at 319.561 kb on - strand at 319.714 kb on + strand at 319.718 kb on - strand at 319.756 kb on - strand at 319.820 kb on - strand at 319.820 kb on - strand at 319.879 kb on + strand at 319.925 kb on + strand at 319.926 kb on - strand at 319.926 kb on - strand at 319.946 kb on + strand at 319.946 kb on + strand at 319.946 kb on + strand at 319.948 kb on + strand at 319.948 kb on + strand at 319.949 kb on - strand at 319.949 kb on - strand at 319.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 317,863 + -0.3 317,864 - +0.1 317,867 + -0.0 317,868 - -1.2 318,036 - QEN71_RS44205 0.14 +0.8 318,036 - QEN71_RS44205 0.14 -0.6 318,212 + QEN71_RS44205 0.36 -2.5 318,213 - QEN71_RS44205 0.36 +0.0 318,213 - QEN71_RS44205 0.36 +0.8 318,214 + QEN71_RS44205 0.36 +1.0 318,376 + QEN71_RS44205 0.57 -0.6 318,380 + QEN71_RS44205 0.57 -1.5 318,380 + QEN71_RS44205 0.57 -1.2 318,380 + QEN71_RS44205 0.57 +0.4 318,381 - QEN71_RS44205 0.58 -0.7 318,381 - QEN71_RS44205 0.58 +0.1 318,381 - QEN71_RS44205 0.58 -1.9 318,381 - QEN71_RS44205 0.58 -2.0 318,381 - QEN71_RS44205 0.58 +0.9 318,412 - QEN71_RS44205 0.61 +0.0 318,497 + QEN71_RS44205 0.72 -0.2 318,526 + QEN71_RS44205 0.76 +1.0 318,601 - QEN71_RS44205 0.85 +0.1 318,784 + +0.3 318,803 + +0.8 318,803 + +0.8 318,803 + -0.6 318,804 - +1.3 318,804 - +0.7 318,804 - -1.0 318,804 - +0.0 318,804 - -0.5 318,804 - -0.0 318,804 - +0.2 318,804 - -0.9 318,804 - -1.7 318,804 - -0.5 318,804 - +0.0 318,825 - -0.2 318,825 - +0.8 318,838 - -1.2 318,863 - QEN71_RS44210 0.19 -2.3 318,863 - QEN71_RS44210 0.19 -0.8 318,876 - QEN71_RS44210 0.28 +0.4 319,134 - -0.5 319,134 - +0.0 319,147 + +0.0 319,157 + +0.3 319,195 + -0.2 319,195 + +2.0 319,232 + -0.8 319,296 + +0.2 319,297 - -0.3 319,304 - -0.4 319,424 - +0.2 319,428 + -1.0 319,429 - -1.2 319,429 - +1.7 319,429 - +0.2 319,442 - -0.4 319,442 - +0.2 319,442 - -0.7 319,494 + +1.4 319,495 - +0.1 319,495 - +0.1 319,500 - -1.6 319,500 - -0.2 319,561 - -0.3 319,714 + -0.1 319,718 - +0.2 319,756 - +0.3 319,820 - -0.3 319,820 - +0.1 319,879 + -0.6 319,925 + -0.8 319,926 - +0.6 319,926 - +0.1 319,946 + -1.3 319,946 + -0.3 319,946 + -1.0 319,948 + +0.6 319,948 + +1.0 319,949 - -0.6 319,949 - -0.8 319,949 - +1.2
Or see this region's nucleotide sequence