Experiment: D,L-Malic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42320 and QEN71_RS42325 are separated by 36 nucleotides QEN71_RS42325 and QEN71_RS42330 are separated by 75 nucleotides QEN71_RS42330 and QEN71_RS42335 are separated by 276 nucleotides
QEN71_RS42320: QEN71_RS42320 - IS4 family transposase, at 544,146 to 545,492
_RS42320
QEN71_RS42325: QEN71_RS42325 - transposase, at 545,529 to 546,125
_RS42325
QEN71_RS42330: QEN71_RS42330 - ATP-binding protein, at 546,201 to 546,733
_RS42330
QEN71_RS42335: QEN71_RS42335 - IS5 family transposase, at 547,010 to 548,463
_RS42335
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 544.537 kb on + strand, within QEN71_RS42320 at 544.946 kb on - strand, within QEN71_RS42320 at 544.946 kb on - strand, within QEN71_RS42320 at 545.016 kb on - strand, within QEN71_RS42320 at 545.134 kb on + strand, within QEN71_RS42320 at 545.135 kb on - strand, within QEN71_RS42320 at 545.135 kb on - strand, within QEN71_RS42320 at 545.155 kb on + strand, within QEN71_RS42320 at 545.156 kb on - strand, within QEN71_RS42320 at 545.579 kb on + strand at 545.579 kb on + strand at 545.604 kb on - strand, within QEN71_RS42325 at 545.830 kb on + strand, within QEN71_RS42325 at 545.831 kb on - strand, within QEN71_RS42325 at 545.854 kb on - strand, within QEN71_RS42325 at 545.866 kb on - strand, within QEN71_RS42325 at 545.951 kb on + strand, within QEN71_RS42325 at 546.166 kb on + strand at 546.202 kb on + strand at 546.206 kb on + strand at 546.289 kb on + strand, within QEN71_RS42330 at 546.290 kb on - strand, within QEN71_RS42330 at 546.544 kb on - strand, within QEN71_RS42330 at 546.573 kb on + strand, within QEN71_RS42330 at 546.586 kb on - strand, within QEN71_RS42330 at 546.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Malic Acid (C) remove 544,537 + QEN71_RS42320 0.29 +0.2 544,946 - QEN71_RS42320 0.59 +0.4 544,946 - QEN71_RS42320 0.59 +0.6 545,016 - QEN71_RS42320 0.65 +0.2 545,134 + QEN71_RS42320 0.73 +1.0 545,135 - QEN71_RS42320 0.73 -0.9 545,135 - QEN71_RS42320 0.73 +1.6 545,155 + QEN71_RS42320 0.75 -2.1 545,156 - QEN71_RS42320 0.75 -0.5 545,579 + +1.3 545,579 + +1.7 545,604 - QEN71_RS42325 0.13 +0.1 545,830 + QEN71_RS42325 0.50 -2.7 545,831 - QEN71_RS42325 0.51 +0.1 545,854 - QEN71_RS42325 0.54 -0.7 545,866 - QEN71_RS42325 0.56 -2.8 545,951 + QEN71_RS42325 0.71 -1.2 546,166 + +0.0 546,202 + +0.4 546,206 + -0.2 546,289 + QEN71_RS42330 0.17 -0.5 546,290 - QEN71_RS42330 0.17 +0.2 546,544 - QEN71_RS42330 0.64 +1.0 546,573 + QEN71_RS42330 0.70 -0.9 546,586 - QEN71_RS42330 0.72 +0.6 546,983 - +0.1
Or see this region's nucleotide sequence